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The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

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第一作者： James M.McCollum

作者： James M.McCollum ^[1] ; Gregory D.Peterson ^[2] ; Chris D.Cox ^[3] ; Michael L.Simpson ^[4] ; Nagiza F.Samatova ^[5]

作者单位： Center for Environmental Biotechnology,University of Tennessee,676 Dabney Hall,Knoxville,TN 37996-1605,USA;Molecular Scale Engineering and Nanoscale Technologies Research Group,Oak Ridge National Laboratory,P.O.Box 2008 MS6006,Oak Ridge,TN 37831,USA ^[1] Center for Environmental Biotechnology,University of Tennessee,676 Dabney Hall,Knoxville,TN 37996-1605,USA;Department of Civil and Environmental Engineering,University of Tennessee,233 Perkins Hall,Knoxville,TN 37996-2010,USA ^[2] Computational Biology Institute,Oak Ridge National Laboratory,P.O.Box 2008 MS6164,Oak Ridge,TN 37831,USA;Department of'Electrical and Computer Engineering,University of Tennessee,414 Ferris Hall,Knoxville,TN 37996-2100,USA;Center for Environmental Bi ^[3] Department of'Electrical and Computer Engineering,University of Tennessee,414 Ferris Hall,Knoxville,TN 37996-2100,USA;Center for Environmental Biotechnology,University of Tennessee,676 Dabney Hall,Knoxville,TN 37996-1605,USA ^[4] ;Computational Biology Institute,Oak Ridge National Laboratory,P.O.Box 2008 MS6164,Oak Ridge,TN 37831,USA ^[5]

关键词 Stochastic simulation Modeling biochemical systems Gillespie algorithm Gene networks Systems biology

发布时间 2013-11-20

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