Sourcing the affinity of flavonoids for the glycogen phosphorylase inhibitor site via crystallography, kinetics and QM/MM-PBSA binding studies: comparison of chrysin and flavopiridol.
第一作者:
Katerina E,Tsitsanou
第一单位:
Institute of Biology, Medicinal Chemistry and Biotechnology, National Hellenic Research Foundation, 48 Vassileos Constantinou Avenue, Athens 11635, Greece.
作者:
关键词
BFEBSSECCSD(T)ChrysinDFTDensity Functional TheoryESPFlavonoidsFlavopiridolGPbGlycogen phosphorylaseGlycogen phosphorylase bMMMO6-2XMOPACMolecular Orbital PACkageNDDOOPLS-AAPLPQMQM-PLDQM/MM-PBSAQuercetagetinRMGPbRMSDRabbit muscle glycogen phosphorylaseT2DType 2 diabetesType-2 diabetesbasis set superposition errorbinding free energycoupled cluster single and doubles with perturbative tripleselectrostatic potentialglc-1-Pglucose 1-phosphatemeta-exchange-correlation functional with double nonlocal exchange amountmolecular mechanicsneglect of diatomic differential overlapoptimized potential for liquid simulations-all atomspyridoxal-5′-phosphatequantum mechanicsquantum mechanics-polarized ligand dockingquantum mechanics/molecular mechanics/Poisson–Boltzmann-surface arearoot-mean-square deviationvan der WaalsvdW
医学主题词
腺苷一磷酸(Adenosine Monophosphate);动物(Animals);结合部位(Binding Sites);结合, 竞争性(Binding, Competitive);色酮类(Chromones);结晶学, X线(Crystallography, X-Ray);酶抑制剂(Enzyme Inhibitors);黄酮类(Flavones);类黄酮物质(Flavonoids);糖原磷酸化酶(Glycogen Phosphorylase);动力学(Kinetics);模型, 分子(Models, Molecular);哌啶类(Piperidines);蛋白质构象(Protein Conformation);兔(Rabbits);构效关系(Structure-Activity Relationship)
DOI
10.1016/j.fct.2012.12.030
PMID
23279842
发布时间
2018-12-02
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