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Controlled vocabularies and ontologies in proteomics: overview, principles and practice.

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第一作者: Gerhard,Mayer
第一单位: Medizinisches Proteom Center (MPC), Ruhr-Universität Bochum, D-44801 Bochum, Germany.
作者单位: Medizinisches Proteom Center (MPC), Ruhr-Universität Bochum, D-44801 Bochum, Germany. [1]
关键词 ANDI-MSAPIASCIIASTMAmerican Society for Testing and MaterialsAmerican Standard Code for Information InterchangeAnalytical Data Interchange format for Mass SpectrometryAnalytical Information Markup LanguageAniMLApplication Programming InterfaceBRENDA (BRaunschweig ENzyme DAtabase) Tissue OntologyBTOCVChEBIChemical Entities of Biological InterestControlled VocabularyControlled vocabulariesDLDescription LogicEBIEuropean Bioinformatics InstituteHDF5HUPO-PSIHierarchical Data Format, version 5Human Proteome Organisation-Proteomics Standards InitiativeICDIUPACInternational Classification of DiseasesInternational Union for Pure and Applied ChemistryJCAMP-DXJoint Committee on Atomic and Molecular Physical data-Data eXchange formatMALDIMIMIAPEMIBBIMITABMSMass SpectrometryMatrix Assisted Laser Desorption IonizationMeSHMedical Subject HeadingsMinimal Information for Biological and Biomedical InvestigationsMinimum Information About a Proteomics ExperimentMolecular InteractionMolecular Interactions TABular formatNCBINCBONational Center for Biomedical OntologyNational Center for Biotechnology InformationNetwork Common Data FormatOBIOBOOLSOWLOntologies in proteomicsOntology Lookup ServiceOntology editors and softwareOntology for Biomedical InvestigationsOntology formatsOntology maintenanceOpen Biological and Biomedical OntologiesPARPATOPRIDEPRoteomics IDEntifications databasePhenotype Attribute Trait OntologyProtein Affinity ReagentsProteomics data standardsRDF(S)Resource Description Framework (Schema)SRMSelected Reaction MonitoringTPPTrans-Proteomic PipelineURIUniform Resource IdentifierWeb Ontology LanguageXSLTYAFMSYet Another Format for Mass SpectrometryeXtensible Stylesheet Language TransformationnetCDF
DOI 10.1016/j.bbapap.2013.02.017
PMID 23429179
发布时间 2025-05-29
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Biochimica et biophysica acta

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