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Analysis of changes in transcription start site distribution by a classification approach.

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第一作者: Kuo-ching,Liang
第一单位: Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.
作者: Kuo-ching,Liang [1] ; Yutaka,Suzuki [2] ; Yutaro,Kumagai [3] ; Kenta,Nakai [4]
作者单位: Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. [1] Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba-ken 227-8561, Japan. [2] Laboratory of Host Defense, World Premier International Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan. [3] Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan; Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba-ken 227-8561, Japan. Electronic address: knakai@ims.u-tokyo.ac.jp. [4]
关键词 AP-1Alternative promotersBAI3CADM2CAGEChIPChanges of TSS distributionDNA complementary to RNAFGF14GADD45gGM-CSFGranulocyte macrophage colony-stimulating factorIFIT1IFNRIKAROS family zinc finger 1IKKIKZF1IL27IL6IRAKIRFIRG1ISG15Interferon regulator factorJAK/STATJanus kinase/signal transducers and activators of transcriptionK(v)K(v) channel interacting protein 4KCNIP4LPSLRRTM4LSAMPMAPKMouse dendritic cellsMyD88NF-κBNFKBIZNRG3NRXN1PCDH9RIP1SOCS1STAT5aStatistical approachTAK1TANKTANK-binding kinase 1TBK1TGF-beta-activated kinase 1TLR4TNF receptor associated factorsTNF-αTRAFTRAF family member-associated NF-κB activatorTRAF-type zinc finger domain containing 1TRAFD1TRIFTSTSCTSSTTRTime-course TSS dataTumor necrosis factor alphaUSP18brain-specific angiogenesis inhibitor 3cDNAcap analysis of gene expressioncell adhesion molecule 2chromatin immunoprecipitationfibroblast growth factor 14growth arrest and DNA-damage-inducible 45 gammaimmunoresponsive gene 1inhibitor of kappa B kinaseinterferon production regulatorinterferon-induced protein with tetratricopeptide repeats 1interleukin 27interleukin 6interleukin receptor-associated kinasejun proto-oncogeneleucine rich repeat transmembrane neuronal 4limbic system-associated membrane proteinlipopolysaccharidemitogen-activated protein kinasemyeloid differentiation primary response gene 88neuregulin 3neurexin 1nuclear factor kappa Bnuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zetaprotocadherin 9receptor (TNFRSF)-interacting serine-threonine kinase 1signal transducer and activator of transcription 5Asuppressor of cytokine signaling 1tissue specificity scoretoll-like receptor 4toll-like receptor adaptor moleculetranscription start sitetranscription start site clustertransthyretinubiquitin specific peptidase 18ubiquitin-like modifiervoltage-gated potassium channel
DOI 10.1016/j.gene.2013.12.038
PMID 24389500
发布时间 2021-12-03
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