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Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space.

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第一作者： Richard,Wilton

第一单位： Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD , USA.

作者： Richard,Wilton ^[1] ; Tamas,Budavari ^[2] ; Ben,Langmead ^[3] ; Sarah J,Wheelan ^[4] ; Steven L,Salzberg ^[5] ; Alexander S,Szalay ^[6]

作者单位： Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD , USA. ^[1] Department of Applied Mathematics and Statistics, Johns Hopkins University , USA. ^[2] Department of Computer Science, Johns Hopkins University , USA ; Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University , USA. ^[3] Department of Oncology, Johns Hopkins University School of Medicine , USA ; Center for Computational Genomics, Johns Hopkins University , USA. ^[4] Department of Computer Science, Johns Hopkins University , USA ; Department of Biomedical Engineering, Johns Hopkins University , USA ; Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University , USA. ^[5] Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD , USA ; Department of Computer Science, Johns Hopkins University , USA. ^[6]

关键词 GPU programming Parallel algorithms Sequence alignment

DOI 10.7717/peerj.808

PMID 25780763

发布时间 2020-12-17

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