An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.

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作者： Antonio,Ribeiro ^[1] ; Agnieszka,Golicz ^[2] ; Christine Anne,Hackett ^[3] ; Iain,Milne ^[4] ; Gordon,Stephen ^[5] ; David,Marshall ^[6] ; Andrew J,Flavell ^[7] ; Micha,Bayer ^[8]

作者单位： The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. antonio.ribeiro@hutton.ac.uk. ^[1] Division of Plant Sciences, University of Dundee at JHI, Invergowrie, Dundee, DD2 5DA, Scotland, UK. antonio.ribeiro@hutton.ac.uk. ^[2] School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland, 4072, Australia. agnieszka.golicz@uq.net.au. ^[3] Australian Centre for Plant Functional Genomics and School of Agriculture and Food Sciences, University of Queensland, Brisbane, Queensland, 4072, Australia. agnieszka.golicz@uq.net.au. ^[4] Biomathematics and Statistics Scotland, Invergowrie, Dundee, DD2 5DA, Scotland, UK. Christine.Hackett@bioss.ac.uk. ^[5] The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. iain.milne@hutton.ac.uk. ^[6] The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. gordon.stephen@hutton.ac.uk. ^[7] The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. david.marshall@hutton.ac.uk. ^[8] Division of Plant Sciences, University of Dundee at JHI, Invergowrie, Dundee, DD2 5DA, Scotland, UK. as.j.flavell@dundee.ac.uk. ^[9] The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. micha.bayer@hutton.ac.uk. ^[10]

主题词拟南芥属(Arabidopsis);数据库, 遗传学(Databases, Genetic);真核生物(Eukaryota);基因组(Genome);基因组学(Genomics);高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing);分子序列注释(Molecular Sequence Annotation);多态性, 单核苷酸(Polymorphism, Single Nucleotide);序列分析, DNA(Sequence Analysis, DNA);软件(Software)

DOI 10.1186/s12859-015-0801-z

PMID 26558718

发布时间 2022-04-08

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BMC bioinformatics

2015年16卷

382页

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An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.

BMC bioinformatics

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An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.

BMC bioinformatics

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BMC bioinformatics

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