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The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations.

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第一作者： Marc,Hellmuth

第一单位： Department of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Straße 47, 17487 , Greifswald, Germany. mhellmuth@mailbox.org.;Center for Bioinformatics, Saarland University, Building E 2.1, P.O. Box 151150, 66041 , Saarbrücken, Germany. mhellmuth@mailbox.org.

作者： Marc,Hellmuth ^[1] ; Peter F,Stadler ^[2] ; Nicolas,Wieseke ^[3]

作者单位： Department of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Straße 47, 17487 , Greifswald, Germany. mhellmuth@mailbox.org.;Center for Bioinformatics, Saarland University, Building E 2.1, P.O. Box 151150, 66041 , Saarbrücken, Germany. mhellmuth@mailbox.org. ^[1] Bioinformatics Group, Department of Computer Science, University of Leipzig, Härtelstraße 16-18, 04107 , Leipzig, Germany.;Interdisciplinary Center of Bioinformatics, University of Leipzig, Härtelstraße 16-18, 04107 , Leipzig, Germany.;Max-Planck-Institute for Mathematics in the Sciences, Inselstraße 22, 04103 , Leipzig, Germany.;Institute of Theoretical Chemistry, University of Vienna, Währingerstraße 17, 1090 , Wien, Austria.;Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, 87501 , USA. ^[2] Parallel Computing and Complex Systems Group, Department of Computer Science, University of Leipzig, Johannisgasse 26, 04103 , Leipzig, Germany.;Interdisciplinary Center of Bioinformatics, University of Leipzig, Johannisgasse 26, 04103 , Leipzig, Germany. ^[3]

关键词 2-Structures Di-cograph Gene tree Integer Linear Program NP-completeness Orthologs Paralogs Recognition algorithm Symbolic ultrametric Uniformly non-prime decomposition Xenologs

医学主题词进化, 分子(Evolution, Molecular);基因转移, 水平(Gene Transfer, Horizontal);模型, 生物学(Models, Biological);种系发生(Phylogeny)

DOI 10.1007/s00285-016-1084-3

PMID 27904954

发布时间 2022-03-11

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