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Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

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第一作者： Oliver,Ratmann

第一单位： Department of Infectious Disease Epidemiology, MRC Centre for Outbreak Analyses and Modelling, School of Public Health, Imperial College London, London, United Kingdom oliver.ratmann@imperial.ac.uk.

作者： Oliver,Ratmann ^[1] ; Emma B,Hodcroft ^[2] ; Michael,Pickles ^[3] ; Anne,Cori ^[3] ; Matthew,Hall ^[4] ; Samantha,Lycett ^[5] ; Caroline,Colijn ^[6] ; Bethany,Dearlove ^[7] ; Xavier,Didelot ^[3] ; Simon,Frost ^[7] ; A S Md Mukarram,Hossain ^[7] ; Jeffrey B,Joy ^[8] ; Michelle,Kendall ^[6] ; Denise,Kühnert ^[9] ; Gabriel E,Leventhal ^[10] ; Richard,Liang ^[11] ; Giacomo,Plazzotta ^[6] ; Art F Y,Poon ^[12] ; David A,Rasmussen ^[13] ; Tanja,Stadler ^[13] ; Erik,Volz ^[3] ; Caroline,Weis ^[13] ; Andrew J,Leigh Brown ^[2] ; Christophe,Fraser ^[14] ; PANGEA-HIV Consortium

作者单位： Department of Infectious Disease Epidemiology, MRC Centre for Outbreak Analyses and Modelling, School of Public Health, Imperial College London, London, United Kingdom oliver.ratmann@imperial.ac.uk. ^[1] School of Biological Sciences, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom. ^[2] Department of Infectious Disease Epidemiology, MRC Centre for Outbreak Analyses and Modelling, School of Public Health, Imperial College London, London, United Kingdom. ^[3] School of Biological Sciences, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.;Nuffield Department of Medicine, Li Ka Shing Centre for Health Information and Discovery, Oxford Big Data Institute, University of Oxford, Oxford, United Kingdom. ^[4] School of Biological Sciences, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.;The Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom. ^[5] Department of Mathematics, Imperial College London, London, United Kingdom. ^[6] Department of Veterinary Medicine, Cambridge Veterinary School, Cambridge, United Kingdom. ^[7] Department of Medicine, University of British Columbia, Vancouver, BC, Canada.;British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada. ^[8] Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.;Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland. ^[9] Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.;Department of Civil and Environmental Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA. ^[10] British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada. ^[11] Department of Pathology & Laboratory Medicine, Western University, Ontario, Canada. ^[12] Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland. ^[13] Department of Infectious Disease Epidemiology, MRC Centre for Outbreak Analyses and Modelling, School of Public Health, Imperial College London, London, United Kingdom.;Nuffield Department of Medicine, Li Ka Shing Centre for Health Information and Discovery, Oxford Big Data Institute, University of Oxford, Oxford, United Kingdom. ^[14]

关键词 HIV transmission and prevention molecular epidemiology of infectious diseases viral phylogenetic methods validation