Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.

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作者： Jake,Lin ^[1] ; Lenka,Kramna ^[2] ; Reija,Autio ^[3] ; Heikki,Hyöty ^[4] ; Matti,Nykter ^[5] ; Ondrej,Cinek ^[6]

作者单位： BioMediTech and Faculty of Medicine and Life Sciences, University of Tampere, PB 100, FI-33014, Tampere, Finland. ^[1] Department of Pediatrics, 2nd Faculty of Medicine, Charles University and University Hospital Motol, V Úvalu 84, 150 06, Praha 5, Czech Republic. ^[2] School of Social Sciences, University of Tampere, Kalevantie 4, 33100, Tampere, Finland. ^[3] BioMediTech and Faculty of Medicine and Life Sciences, University of Tampere, PB 100, FI-33014, Tampere, Finland. heikki.hyoty@uta.fi. ^[4] Fimlab Laboratories, Pirkanmaa Hospital District, Tampere, Finland. heikki.hyoty@uta.fi. ^[5] BioMediTech and Faculty of Medicine and Life Sciences, University of Tampere, PB 100, FI-33014, Tampere, Finland. matti.nykter@uta.fi. ^[6] Department of Pediatrics, 2nd Faculty of Medicine, Charles University and University Hospital Motol, V Úvalu 84, 150 06, Praha 5, Czech Republic. ondrej.cinek@lfmotol.cuni.cz. ^[7]

关键词 Assembly Metagenomics NGS analysis Parallel processing Viral dark matter Viromes Virus Visualization

主题词遗传变异(Genetic Variation);基因组学(Genomics);高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing);人类(Humans);因特网(Internet);软件(Software);病毒(Viruses)

DOI 10.1186/s12864-017-3721-7

PMID 28506246

发布时间 2018-11-13

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