PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures.

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第一作者： Mirko,Ledda

第一单位： Department of Biomedical Engineering and Genome Center, UC Davis, 1 Shields Ave, Davis, 95616, USA.

作者： Mirko,Ledda ^[1] ; Sharon,Aviran ^[2]

作者单位： Department of Biomedical Engineering and Genome Center, UC Davis, 1 Shields Ave, Davis, 95616, USA. ^[1] Integrative Genetics and Genomics Graduate Group, UC Davis, 1 Shields Ave, Davis, 95616, USA. ^[2] Department of Biomedical Engineering and Genome Center, UC Davis, 1 Shields Ave, Davis, 95616, USA. saviran@ucdavis.edu. ^[3]

关键词 Functional elements GMM-HMM Machine learning PARS Pattern recognition RNA structure RNA structure–function SHAPE Structure probing Transcriptome-wide profiling

主题词算法(Algorithms);模型, 统计学(Models, Statistical);RNA(RNA)

DOI 10.1186/s13059-018-1399-z

PMID 29495968

发布时间 2024-03-14

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