换一批
第一作者：
Julia Koehler,Leman
第一单位：
Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA. Julia.koehler.leman@nyu.edu.;Department of Biology, New York University, New York, New York, USA. Julia.koehler.leman@nyu.edu.
作者：
Julia Koehler,Leman [1]
;
Brian D,Weitzner [2]
;
Steven M,Lewis [3]
;
Jared,Adolf-Bryfogle [4]
;
Nawsad,Alam [5]
;
Rebecca F,Alford [6]
;
Melanie,Aprahamian [7]
;
David,Baker [8]
;
Kyle A,Barlow [9]
;
Patrick,Barth [10]
;
Benjamin,Basanta [11]
;
Brian J,Bender [12]
;
Kristin,Blacklock [13]
;
Jaume,Bonet [14]
;
Scott E,Boyken [15]
;
Phil,Bradley [16]
;
Chris,Bystroff [17]
;
Patrick,Conway [18]
;
Seth,Cooper [19]
;
Bruno E,Correia [14]
;
Brian,Coventry [18]
;
Rhiju,Das [20]
;
René M,De Jong [21]
;
Frank,DiMaio [8]
;
Lorna,Dsilva [19]
;
Roland,Dunbrack [22]
;
Alexander S,Ford [18]
;
Brandon,Frenz [23]
;
Darwin Y,Fu [24]
;
Caleb,Geniesse [20]
;
Lukasz,Goldschmidt [18]
;
Ragul,Gowthaman [25]
;
Jeffrey J,Gray [26]
;
Dominik,Gront [27]
;
Sharon,Guffy [28]
;
Scott,Horowitz [29]
;
Po-Ssu,Huang [18]
;
Thomas,Huber [30]
;
Tim M,Jacobs [31]
;
Jeliazko R,Jeliazkov [32]
;
David K,Johnson [33]
;
Kalli,Kappel [34]
;
John,Karanicolas [22]
;
Hamed,Khakzad [35]
;
Karen R,Khar [36]
;
Sagar D,Khare [37]
;
Firas,Khatib [38]
;
Alisa,Khramushin [5]
;
Indigo C,King [39]
;
Robert,Kleffner [19]
;
Brian,Koepnick [18]
;
Tanja,Kortemme [40]
;
Georg,Kuenze [41]
;
Brian,Kuhlman [28]
;
Daisuke,Kuroda [42]
;
Jason W,Labonte [43]
;
Jason K,Lai [44]
;
Gideon,Lapidoth [45]
;
Andrew,Leaver-Fay [28]
;
Steffen,Lindert [7]
;
Thomas,Linsky [8]
;
Nir,London [5]
;
Joseph H,Lubin [6]
;
Sergey,Lyskov [6]
;
Jack,Maguire [31]
;
Lars,Malmström [46]
;
Enrique,Marcos [47]
;
Orly,Marcu [5]
;
Nicholas A,Marze [6]
;
Jens,Meiler [48]
;
Rocco,Moretti [24]
;
Vikram Khipple,Mulligan [49]
;
Santrupti,Nerli [50]
;
Christoffer,Norn [45]
;
Shane,Ó'Conchúir [40]
;
Noah,Ollikainen [40]
;
Sergey,Ovchinnikov [51]
;
Michael S,Pacella [6]
;
Xingjie,Pan [40]
;
Hahnbeom,Park [18]
;
Ryan E,Pavlovicz [52]
;
Manasi,Pethe [53]
;
Brian G,Pierce [25]
;
Kala Bharath,Pilla [30]
;
Barak,Raveh [5]
;
P Douglas,Renfrew [54]
;
Shourya S Roy,Burman [6]
;
Aliza,Rubenstein [55]
;
Marion F,Sauer [56]
;
Andreas,Scheck [14]
;
William,Schief [4]
;
Ora,Schueler-Furman [5]
;
Yuval,Sedan [5]
;
Alexander M,Sevy [56]
;
Nikolaos G,Sgourakis [57]
;
Lei,Shi [8]
;
Justin B,Siegel [58]
;
Daniel-Adriano,Silva [18]
;
Shannon,Smith [24]
;
Yifan,Song [52]
;
Amelie,Stein [40]
;
Maria,Szegedy [59]
;
Frank D,Teets [28]
;
Summer B,Thyme [18]
;
Ray Yu-Ruei,Wang [18]
;
Andrew,Watkins [20]
;
Lior,Zimmerman [5]
;
Richard,Bonneau [60]
作者单位：
Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA. Julia.koehler.leman@nyu.edu.;Department of Biology, New York University, New York, New York, USA. Julia.koehler.leman@nyu.edu.
[1]
Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.;Department of Biochemistry, University of Washington, Seattle, WA, USA.;Institute for Protein Design, University of Washington, Seattle, WA, USA.;Lyell Immunopharma Inc., Seattle, WA, USA.
[2]
Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.;Department of Biochemistry, Duke University, Durham, NC, USA.;Cyrus Biotechnology, Seattle, WA, USA.
[3]
Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
[4]
Department of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
[5]
Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.
[6]
Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH, USA.
[7]
Department of Biochemistry, University of Washington, Seattle, WA, USA.;Institute for Protein Design, University of Washington, Seattle, WA, USA.
[8]
Graduate Program in Bioinformatics, University of California San Francisco, San Francisco, CA, USA.
[9]
Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.;Baylor College of Medicine, Department of Pharmacology, Houston, TX, USA.
[10]
Department of Biochemistry, University of Washington, Seattle, WA, USA.;Biological Physics Structure and Design PhD Program, University of Washington, Seattle, WA, USA.
[11]
Department of Pharmacology, Vanderbilt University, Nashville, TN, USA.
[12]
Institute of Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
[13]
Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.;Swiss Institute of Bioinformatics, Lausanne, Switzerland.
[14]
Institute for Protein Design, University of Washington, Seattle, WA, USA.;Lyell Immunopharma Inc., Seattle, WA, USA.
[15]
Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
[16]
Department of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, USA.
[17]
Department of Biochemistry, University of Washington, Seattle, WA, USA.
[18]
Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA.
[19]
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.
[20]
DSM Biotechnology Center, Delft, the Netherlands.
[21]
Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA, USA.
[22]
Institute for Protein Design, University of Washington, Seattle, WA, USA.;Cyrus Biotechnology, Seattle, WA, USA.
[23]
Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
[24]
University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD, USA.;Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.
[25]
Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.;Program in Molecular Biophysics, Johns Hopkins University, Baltimore, MD, USA.
[26]
Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland.
[27]
Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
[28]
Department of Chemistry & Biochemistry, University of Denver, Denver, CO, USA.;The Knoebel Institute for Healthy Aging, University of Denver, Denver, CO, USA.
[29]
Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory, Australia.
[30]
Program in Bioinformatics and Computational Biology, Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
[31]
Program in Molecular Biophysics, Johns Hopkins University, Baltimore, MD, USA.
[32]
Center for Computational Biology, University of Kansas, Lawrence, KS, USA.
[33]
Biophysics Program, Stanford University, Stanford, CA, USA.
[34]
Swiss Institute of Bioinformatics, Lausanne, Switzerland.;Institute for Computational Science, University of Zurich, Zurich, Switzerland.;S3IT, University of Zurich, Zurich, Switzerland.
[35]
Cyrus Biotechnology, Seattle, WA, USA.;Center for Computational Biology, University of Kansas, Lawrence, KS, USA.
[36]
Institute of Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.;Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.;Department of Chemistry and Chemical Biology, The State University of New Jersey, Piscataway, NJ, USA.;Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.;Computational Biology and Molecular Biophysics Program, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
[37]
Department of Computer and Information Science, University of Massachusetts Dartmouth, Dartmouth, MA, USA.
[38]
Department of Biochemistry, University of Washington, Seattle, WA, USA.;Cyrus Biotechnology, Seattle, WA, USA.
[39]
Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
[40]
Department of Chemistry, Vanderbilt University, Nashville, TN, USA.;Center for Structural Biology, Vanderbilt University, Nashville, TN, USA.
[41]
Medical Device Development and Regulation Research Center, School of Engineering, University of Tokyo, Tokyo, Japan.;Department of Bioengineering, School of Engineering, University of Tokyo, Tokyo, Japan.
[42]
Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.;Department of Chemistry, Franklin & Marshall College, Lancaster, PA, USA.
[43]
Baylor College of Medicine, Department of Pharmacology, Houston, TX, USA.
[44]
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
[45]
Swiss Institute of Bioinformatics, Lausanne, Switzerland.;Institute for Computational Science, University of Zurich, Zurich, Switzerland.;S3IT, University of Zurich, Zurich, Switzerland.;Division of Infection Medicine, Department of Clinical Sciences Lund, Faculty of Medicine, Lund University, Lund, Sweden.
[46]
Department of Biochemistry, University of Washington, Seattle, WA, USA.;Institute for Research in Biomedicine Barcelona, The Barcelona Institute of Science and Technology, Barcelona, Spain.
[47]
Center for Structural Biology, Vanderbilt University, Nashville, TN, USA.;Departments of Chemistry, Pharmacology and Biomedical Informatics, Vanderbilt University, Nashville, TN, USA.;Institute for Chemical Biology, Vanderbilt University, Nashville, TN, USA.
[48]
Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.;Department of Biochemistry, University of Washington, Seattle, WA, USA.;Institute for Protein Design, University of Washington, Seattle, WA, USA.
[49]
Department of Computer Science, University of California Santa Cruz, Santa Cruz, CA, USA.
[50]
Department of Biochemistry, University of Washington, Seattle, WA, USA.;Institute for Protein Design, University of Washington, Seattle, WA, USA.;Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA.
[51]
Department of Biochemistry, University of Washington, Seattle, WA, USA.;Institute for Protein Design, University of Washington, Seattle, WA, USA.;Cyrus Biotechnology, Seattle, WA, USA.
[52]
Department of Chemistry and Chemical Biology, The State University of New Jersey, Piscataway, NJ, USA.;Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
[53]
Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA.
[54]
Institute of Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.;Computational Biology and Molecular Biophysics Program, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
[55]
Chemical and Physical Biology Program, Vanderbilt Vaccine Center, Vanderbilt University, Nashville, TN, USA.
[56]
Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA, USA.
[57]
Department of Chemistry, University of California, Davis, Davis, CA, USA.;Department of Biochemistry and Molecular Medicine, University of California, Davis, Davis, California, USA.;Genome Center, University of California, Davis, Davis, CA, USA.
[58]
Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
[59]
Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA. Bonneau@nyu.edu.;Department of Biology, New York University, New York, New York, USA. Bonneau@nyu.edu.;Department of Computer Science, New York University, New York, NY, USA. Bonneau@nyu.edu.;Center for Data Science, New York University, New York, NY, USA. Bonneau@nyu.edu.
[60]
医学主题词
大分子物质(Macromolecular Substances);模型, 分子(Models, Molecular);多肽模拟物(Peptidomimetics);蛋白质构象(Protein Conformation);蛋白质类(Proteins);软件(Software)
DOI
10.1038/s41592-020-0848-2
PMID
32483333
发布时间
2025-05-30
- 浏览4
Nature methods
Nature methods
665-680页
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