Finding new cancer epigenetic and genetic biomarkers from cell-free DNA by combining SALP-seq and machine learning.
第一作者:
Shicai,Liu
第一单位:
State Key Laboratory of Bioelectronics, Southeast University, Nanjing 210096, China.
作者:
关键词
ATAC-seq, Assay for Transposase-Accessible Chromatin-sequencing and high-throughput sequencingAUC, Area Under CurveBiomarkersCTC, circulating tumor cellCell-free DNAESCA, esophageal cancerEsophageal cancerNGS, next generation sequencingNIPT, noninvasive prenatal testingNext generation sequencingPCA, principal component analysisSALP-seqSALP-seq, Single strand Adaptor Library Preparation-sequencingSNP, single nucleotide polymorphismSNV, single nucleotide variantTCGA, The Cancer Genome AtlasTF, transcription factorTFBS, TF binding siteTSS, transcription start siteTi, transitionsTv, transversioncfDNA, cell-free DNAcfMeDIP-seq, cell-free methylated DNA immunoprecipitation and high-throughput sequencingctDNA, cell-free tumor DNAmRNA, messenger RNAmiRNA, microRNA
DOI
10.1016/j.csbj.2020.06.042
PMID
32774784
发布时间
2020-09-28
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