CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets.

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第一作者： Xu-Kai,Ma

第一单位： CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, China.

作者： Xu-Kai,Ma ^[1] ; Wei,Xue ^[1] ; Ling-Ling,Chen ^[2] ; Li,Yang ^[3]

作者单位： CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, China. ^[1] State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, China; School of Life Science and Technology, ShanghaiTech University, 393 Middle Huaxia Road, Shanghai 201210, China; School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, China. ^[2] CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, China; School of Life Science and Technology, ShanghaiTech University, 393 Middle Huaxia Road, Shanghai 201210, China. Electronic address: liyang@picb.ac.cn. ^[3]

关键词 Alternative back-splicing CIRCexplorer CircRNA Circular RNA Non-polyadenylated RNA-seq

主题词计算生物学(Computational Biology);外显子(Exons);RNA(RNA);RNA剪接(RNA Splicing)

DOI 10.1016/j.ymeth.2021.02.008

PMID 33588028

发布时间 2022-04-01

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