SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.

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第一作者： Nicholas J,Eagles

第一单位： Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.

作者： Nicholas J,Eagles ^[1] ; Emily E,Burke ^[1] ; Jacob,Leonard ^[2] ; Brianna K,Barry ^[3] ; Joshua M,Stolz ^[1] ; Louise,Huuki ^[4] ; BaDoi N,Phan ^[1] ; Violeta Larios,Serrato ^[1] ; Everardo,Gutiérrez-Millán ^[1] ; Israel,Aguilar-Ordoñez ^[5] ; Andrew E,Jaffe ^[6] ; Leonardo,Collado-Torres ^[2]

作者单位： Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA. ^[1] Winter Genomics, Salaverry 874 int 100, Lindavista, CDMX, 07300, Mexico. ^[2] QuestBridge Scholar, Palo Alto, CA, 94303, USA. ^[3] Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA. ^[4] Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, 15213, USA. ^[5] Medical Scientist Training Program, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15213, USA. ^[6] Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Mexico City, CDMX, 11340, Mexico. ^[7] Department of Supercomputing, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, CDMX, 14610, Mexico. ^[8] Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA. ^[9] Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, USA. ^[10] Department of Genetic Medicine, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA. ^[11] Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA. ^[12] Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, USA. ^[13] Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA. lcolladotor@gmail.com. ^[14] Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA. lcolladotor@gmail.com. ^[15]

关键词 Bioconductor Pipeline RNA-seq

主题词高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing);序列分析, RNA(Sequence Analysis, RNA);软件(Software);工作流(Workflow)

DOI 10.1186/s12859-021-04142-3

PMID 33932985

发布时间 2024-04-01

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