Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Clusters Based on Integrated Genomic Surveillance, Outbreak Analysis and Contact Tracing in an Urban Setting.

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作者： Andreas,Walker ^[1] ; Torsten,Houwaart ^[2] ; Patrick,Finzer ^[2] ; Lutz,Ehlkes ^[3] ; Alona,Tyshaieva ^[4] ; Maximilian,Damagnez ^[5] ; Daniel,Strelow ^[2] ; Ashley,Duplessis ^[1] ; Jessica,Nicolai ^[2] ; Tobias,Wienemann ^[1] ; Teresa,Tamayo ^[2] ; Malte,Kohns Vasconcelos ^[2] ; Lisanna,Hülse ^[2] ; Katrin,Hoffmann ^[2] ; Nadine,Lübke ^[2] ; Sandra,Hauka ^[3] ; Marcel,Andree ^[4] ; Martin P,Däumer ^[1] ; Alexander,Thielen ^[1] ; Susanne,Kolbe-Busch ^[1] ; Klaus,Göbels ^[6] ; Rainer,Zotz ^[6] ; Klaus,Pfeffer ^[2] ; Jörg,Timm ^[5] ; Alexander T,Dilthey ^[3] ; German COVID-19 OMICS Initiative (DeCOI) ^[4]

作者单位： Institute of Virology, University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany. ^[1] Institute of Medical Microbiology and Hospital Hygiene, Heinrich Heine University Düsseldorf, Düsseldorf, Germany. ^[2] Zotz ^[3] Klimas, Düsseldorf, Germany. ^[4] Düsseldorf Health Department (Gesundheitsamt Düsseldorf), Düsseldorf, Germany. ^[5] SeqIT GmbH, Pfaffplatz 10, 67655 Kaiserslautern, Germany. ^[6] Institute of Medical Statistics and Computational Biology, University of Cologne, Cologne, Germany. ^[7] Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. ^[8]

关键词 Nanopore sequencing community transmission genomic epidemiology infection chain rapid sequencing

主题词接触者追踪(Contact Tracing);疾病暴发流行(Disease Outbreaks);基因组学(Genomics);人类(Humans)

DOI 10.1093/cid/ciab588

PMID 34181711

发布时间 2022-04-01

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