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Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa.

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作者: Raquel,Viana [1] ; Sikhulile,Moyo [2] ; Daniel G,Amoako [3] ; Houriiyah,Tegally [4] ; Cathrine,Scheepers [5] ; Christian L,Althaus [6] ; Ugochukwu J,Anyaneji [4] ; Phillip A,Bester [7] ; Maciej F,Boni [8] ; Mohammed,Chand [9] ; Wonderful T,Choga [10] ; Rachel,Colquhoun [11] ; Michaela,Davids [12] ; Koen,Deforche [13] ; Deelan,Doolabh [14] ; Louis,du Plessis [15] ; Susan,Engelbrecht [16] ; Josie,Everatt [3] ; Jennifer,Giandhari [4] ; Marta,Giovanetti [17] ; Diana,Hardie [18] ; Verity,Hill [11] ; Nei-Yuan,Hsiao [19] ; Arash,Iranzadeh [20] ; Arshad,Ismail [3] ; Charity,Joseph [9] ; Rageema,Joseph [14] ; Legodile,Koopile [21] ; Sergei L,Kosakovsky Pond [22] ; Moritz U G,Kraemer [23] ; Lesego,Kuate-Lere [24] ; Oluwakemi,Laguda-Akingba [25] ; Onalethatha,Lesetedi-Mafoko [26] ; Richard J,Lessells [4] ; Shahin,Lockman [27] ; Alexander G,Lucaci [22] ; Arisha,Maharaj [4] ; Boitshoko,Mahlangu [3] ; Tongai,Maponga [16] ; Kamela,Mahlakwane [28] ; Zinhle,Makatini [29] ; Gert,Marais [18] ; Dorcas,Maruapula [21] ; Kereng,Masupu [30] ; Mogomotsi,Matshaba [31] ; Simnikiwe,Mayaphi [32] ; Nokuzola,Mbhele [14] ; Mpaphi B,Mbulawa [33] ; Adriano,Mendes [12] ; Koleka,Mlisana [34] ; Anele,Mnguni [3] ; Thabo,Mohale [3] ; Monika,Moir [35] ; Kgomotso,Moruisi [24] ; Mosepele,Mosepele [36] ; Gerald,Motsatsi [3] ; Modisa S,Motswaledi [37] ; Thongbotho,Mphoyakgosi [33] ; Nokukhanya,Msomi [38] ; Peter N,Mwangi [39] ; Yeshnee,Naidoo [4] ; Noxolo,Ntuli [3] ; Martin,Nyaga [39] ; Lucier,Olubayo [40] ; Sureshnee,Pillay [4] ; Botshelo,Radibe [21] ; Yajna,Ramphal [4] ; Upasana,Ramphal [4] ; James E,San [4] ; Lesley,Scott [41] ; Roger,Shapiro [27] ; Lavanya,Singh [4] ; Pamela,Smith-Lawrence [24] ; Wendy,Stevens [41] ; Amy,Strydom [12] ; Kathleen,Subramoney [29] ; Naume,Tebeila [3] ; Derek,Tshiabuila [4] ; Joseph,Tsui [23] ; Stephanie,van Wyk [35] ; Steven,Weaver [22] ; Constantinos K,Wibmer [3] ; Eduan,Wilkinson [35] ; Nicole,Wolter [42] ; Alexander E,Zarebski [23] ; Boitumelo,Zuze [21] ; Dominique,Goedhals [43] ; Wolfgang,Preiser [28] ; Florette,Treurnicht [29] ; Marietje,Venter [12] ; Carolyn,Williamson [44] ; Oliver G,Pybus [23] ; Jinal,Bhiman [5] ; Allison,Glass [45] ; Darren P,Martin [46] ; Andrew,Rambaut [11] ; Simani,Gaseitsiwe [47] ; Anne,von Gottberg [42] ; Tulio,de Oliveira [48]
作者单位: Lancet Laboratories, Johannesburg, South Africa. [1] Botswana Harvard AIDS Institute Partnership, Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana.;Harvard T.H. Chan School of Public Health, Boston, MA, USA.;Botswana Presidential COVID-19 Taskforce, Gaborone, Botswana. [2] National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa. [3] KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa. [4] National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.;South African Medical Research Council Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa. [5] Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland. [6] Division of Virology, National Health Laboratory Service, Bloemfontein, South Africa.;Division of Virology, University of the Free State, Bloemfontein, South Africa. [7] Center for Infectious Disease Dynamics, Department of Biology, Pennsylvania State University, University Park, PA, USA. [8] Diagnofirm Medical Laboratories, Gaborone, Botswana. [9] Harvard T.H. Chan School of Public Health, Boston, MA, USA. [10] Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK. [11] Zoonotic Arbo and Respiratory Virus Program, Centre for Viral Zoonoses, Department of Medical Virology, University of Pretoria, Pretoria, South Africa. [12] Emweb, Herent, Belgium. [13] Division of Medical Virology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa. [14] Department of Zoology, University of Oxford, Oxford, UK.;Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland. [15] Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, Cape Town, South Africa. [16] Laboratorio de Flavivirus, Fundacao Oswaldo Cruz, Rio de Janeiro, Brazil.;Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil. [17] Division of Medical Virology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.;Division of Virology, NHLS Groote Schuur Laboratory, Cape Town, South Africa. [18] Division of Medical Virology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.;Division of Virology, NHLS Groote Schuur Laboratory, Cape Town, South Africa.;Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), Cape Town, South Africa. [19] Division of Computational Biology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa. [20] Botswana Harvard AIDS Institute Partnership, Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana. [21] Institute for Genomics and Evolutionary Medicine, Department of Biology, Temple University, Philadelphia, PA, USA. [22] Department of Zoology, University of Oxford, Oxford, UK. [23] Health Services Management, Ministry of Health and Wellness, Gaborone, Botswana. [24] NHLS Port Elizabeth Laboratory, Port Elizabeth, South Africa.;Faculty of Health Sciences, Walter Sisulu University, Mthatha, South Africa. [25] Public Health Department, Integrated Disease Surveillance and Response, Ministry of Health and Wellness, Gaborone, Botswana. [26] Botswana Harvard AIDS Institute Partnership, Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana.;Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA. [27] Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, Cape Town, South Africa.;NHLS Tygerberg Laboratory, Tygerberg Hospital, Cape Town, South Africa. [28] Department of Virology, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa. [29] Botswana Presidential COVID-19 Taskforce, Gaborone, Botswana. [30] Botswana Presidential COVID-19 Taskforce, Gaborone, Botswana.;Botswana-Baylor Children's Clinical Centre of Excellence, Gaborone, Botswana.;Baylor College of Medicine, Houston, TX, USA. [31] Department of Medical Virology, University of Pretoria, Pretoria, South Africa. [32] National Health Laboratory, Health Services Management, Ministry of Health and Wellness, Gaborone, Botswana. [33] National Health Laboratory Service (NHLS), Johannesburg, South Africa.;Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa. [34] Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa. [35] Botswana Presidential COVID-19 Taskforce, Gaborone, Botswana.;Department of Medicine, Faculty of Medicine, University of Botswana, Gaborone, Botswana. [36] Botswana Presidential COVID-19 Taskforce, Gaborone, Botswana.;Department of Medical Laboratory Sciences, School of Allied Health Professions, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana. [37] Discipline of Virology, School of Laboratory Medicine and Medical Sciences and National Health Laboratory Service (NHLS), University of KwaZulu-Natal, Durban, South Africa. [38] Division of Virology, University of the Free State, Bloemfontein, South Africa.;Next Generation Sequencing Unit, Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa. [39] Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), Cape Town, South Africa.;Division of Computational Biology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa. [40] Department of Molecular Medicine and Haematology, University of the Witwatersrand, Johannesburg, South Africa. [41] National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.;School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa. [42] Division of Virology, University of the Free State, Bloemfontein, South Africa.;PathCare Vermaak, Pretoria, South Africa. [43] Division of Medical Virology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.;Division of Virology, NHLS Groote Schuur Laboratory, Cape Town, South Africa.;Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), Cape Town, South Africa.;Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa. [44] Lancet Laboratories, Johannesburg, South Africa.;Department of Molecular Pathology, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa. [45] Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), Cape Town, South Africa.;Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa. [46] Botswana Harvard AIDS Institute Partnership, Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana.;Harvard T.H. Chan School of Public Health, Boston, MA, USA. [47] KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa. tulio@sun.ac.za.;Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa. tulio@sun.ac.za.;Department of Global Health, University of Washington, Seattle, WA, USA. tulio@sun.ac.za. [48]
DOI 10.1038/s41586-022-04411-y
PMID 35042229
发布时间 2024-12-07
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