SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments.

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第一作者： Nelina,Angelova

第一单位： Hellenic Centre for Marine Research (HCMR), Former U.S. Base of Gournes, Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), P.O. Box 2214, 71003, Heraklion, Crete, Greece.

作者： Nelina,Angelova ^[1] ; Theodoros,Danis ^[2] ; Jacques,Lagnel ^[3] ; Costas S,Tsigenopoulos ^[1] ; Tereza,Manousaki ^[4]

作者单位： Hellenic Centre for Marine Research (HCMR), Former U.S. Base of Gournes, Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), P.O. Box 2214, 71003, Heraklion, Crete, Greece. ^[1] Hellenic Centre for Marine Research (HCMR), Former U.S. Base of Gournes, Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), P.O. Box 2214, 71003, Heraklion, Crete, Greece.;School of Medicine, University of Crete, 71003, Heraklion, Crete, Greece. ^[2] INRAE, UR1052, Génétique et Amélioration des Fruits et Légumes (GAFL), 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, 84143, Montfavet, France. ^[3] Hellenic Centre for Marine Research (HCMR), Former U.S. Base of Gournes, Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), P.O. Box 2214, 71003, Heraklion, Crete, Greece. tereza@hcmr.gr. ^[4]

关键词 Assembly Container Genome Pipeline de-novo

主题词算法(Algorithms);计算生物学(Computational Biology);基因组(Genome);高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing);序列分析, DNA(Sequence Analysis, DNA);软件(Software)

DOI 10.1186/s13104-022-05978-5

PMID 35255960

发布时间 2022-03-18

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