换一批
换一批
作者：
关键词
AOI, area of illuminationBICCN, Brain Initiative Cell Census NetworkBOLORAMIS, barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analysesBaysor, Bayesian Segmentation of Spatial Transcriptomics DataBinSpect, Binary Spatial ExtractionCCC, cell–cell communicationCCI, cell–cell interactionsCNV, copy-number variationComputational biologyDSP, digital spatial profilingDbiT-Seq, Deterministic Barcoding in Tissue for spatial omics sequencingFA, factor analysisFFPE, formalin-fixed, paraffin-embeddedFISH, fluorescence in situ hybridizationFISSEQ, fluorescence in situ sequencing of RNAFOV, Field of viewGRNs, gene regulation networksGSEA, gene set enrichment analysisGSVA, gene set variation analysisHDST, high definition spatial transcriptomicsHMRF, hidden Markov random fieldICG, interaction changed genesISH, in situ hybridizationISS, in situ sequencingJSTA, Joint cell segmentation and cell type annotationKNN, k-nearest neighborLCM, Laser Capture MicrodissectionLCM-seq, laser capture microdissection coupled with RNA sequencingLOH, loss of heterozygosity analysisMC, Molecular CartographyMERFISH, multiplexed error-robust FISHNMF (NNMF), Non-negative matrix factorizationPCA, Principal Component AnalysisPIXEL-seq, Polony (or DNA cluster)-indexed library-sequencingPL-lig, padlock ligationQC, quality controlRNAseq, RNA sequencingROI, region of interestSCENIC, Single-Cell rEgulatory Network Inference and ClusteringSME, Spatial Morphological gene Expression normalizationSPATA, SPAtial Transcriptomic AnalysisST Pipeline, Spatial Transcriptomics PipelineST, Spatial transcriptomicsSTARmap, spatially-resolved transcript amplicon readout mappingSingle-cell analysisSpatial data analysis frameworksSpatial deconvolutionSpatial transcriptomicsTIVA, Transcriptome in Vivo AnalysisTMA, tissue microarrayTME, tumor micro environmentUMAP, Uniform Manifold Approximation and Projection for Dimension ReductionUMI, unique molecular identifierZipSeq, zipcoded sequencing.scRNA-seq, single-cell RNA sequencingscvi-tools, single-cell variational inference toolsseqFISH, sequential fluorescence in situ hybridizationsequ-smFISH, sequential single-molecule fluorescent in situ hybridizationsmFISH, single molecule FISHt-SNE, t-distributed stochastic neighbor embedding
DOI
10.1016/j.csbj.2022.08.043
PMID
36147664
发布时间
2023-11-01
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