transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.

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作者： Timothy R,Fallon ^[1] ; Tereza,Čalounová ^[2] ; Martin,Mokrejš ^[2] ; Jing-Ke,Weng ^[3] ; Tomáš,Pluskal ^[4]

作者单位： Scripps Institution of Oceanography, UC San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA. ^[1] Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 16000, Prague 6, Czech Republic. ^[2] Whitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA, 02142, USA. wengj@wi.mit.edu. ^[3] Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. wengj@wi.mit.edu. ^[4] Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 16000, Prague 6, Czech Republic. tomas.pluskal@uochb.cas.cz. ^[5]

关键词 De novo transcriptome assembly Differential expression analysis High-performance computing Non-model organisms RNA-seq Reproducible software Transcriptome annotation

主题词序列分析, RNA(Sequence Analysis, RNA);软件(Software);基因表达谱(Gene Expression Profiling);分子序列注释(Molecular Sequence Annotation)

DOI 10.1186/s12859-023-05254-8

PMID 37016291

发布时间 2024-05-15

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