MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.

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作者： Marcela,Uliano-Silva ^[1] ; João Gabriel R N,Ferreira ^[2] ; Ksenia,Krasheninnikova ^[3] ; Darwin Tree of Life Consortium ^[4] ; Giulio,Formenti ^[5] ; Linelle,Abueg ^[5] ; James,Torrance ^[4] ; Eugene W,Myers ^[6] ; Richard,Durbin ^[7] ; Mark,Blaxter ^[4] ; Shane A,McCarthy ^[8]

作者单位： Tree of Life, Wellcome Sanger Institute, Cambridge, CB10 1SA, UK. mu2@sanger.ac.uk. ^[1] Bio Bureau Biotecnologia, Rio de Janeiro, Brazil. ^[2] Instituto de Biofísica Carlos Chagas Filho, UniversidadeFederal Do Rio de Janeiro, Rio de Janeiro, Brazil. ^[3] Tree of Life, Wellcome Sanger Institute, Cambridge, CB10 1SA, UK. ^[4] The Rockefeller University, New York, NY, USA. ^[5] Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany. ^[6] Okinawa Institute of Science and Technology, Okinawa, Japan. ^[7] Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK. ^[8]

关键词 DToL Docker Heteroplasmy HiFi Long reads MitoHiFi Mitogenome Python Singularity

主题词基因组, 线粒体(Genome, Mitochondrial);种系发生(Phylogeny);RNA(RNA);真核生物(Eukaryota);序列分析, DNA(Sequence Analysis, DNA);高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing)

DOI 10.1186/s12859-023-05385-y

PMID 37464285

发布时间 2024-03-13

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