ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs.

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第一作者： Karl Johan,Westrin

第一单位： Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.

作者： Karl Johan,Westrin ^[1] ; Warren W,Kretzschmar ^[2] ; Olof,Emanuelsson ^[3]

作者单位： Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden. ^[1] Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.;Department of Medicine Huddinge, Center for Hematology and Regenerative Medicine (HERM), Karolinska Institute, 141 52, Flemingsberg, Sweden. ^[2] Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden. olofem@kth.se. ^[3]

关键词 De novo transcriptome assembly Guiding contigs Isoform assembly RNA-seq Recall/sensitivity

主题词序列分析(Sequence Analysis);序列分析, RNA(Sequence Analysis, RNA);蛋白质亚型(Protein Isoforms);高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing)

DOI 10.1186/s12859-024-05663-3

PMID 38302873

发布时间 2024-02-06

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