An integrated method for targeted Oxford Nanopore sequencing and automated bioinformatics for the simultaneous detection of bacteria, fungi, and ARG.

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作者： Sanjana,Kuruwa ^[1] ; Amrutraj,Zade ^[1] ; Sanchi,Shah ^[1] ; Rameez,Moidu ^[1] ; Shailesh,Lad ^[1] ; Chhaya,Chande ^[2] ; Ameeta,Joshi ^[2] ; Nilma,Hirani ^[2] ; Chaitali,Nikam ^[1] ; Sanjay,Bhattacharya ^[3] ; Aruna,Poojary ^[4] ; Mahua,Kapoor ^[5] ; Kiran,Kondabagil ^[1] ; Anirvan,Chatterjee ^[6]

作者单位： HaystackAnalytics Pvt. Ltd, SINE, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India. ^[1] Department of Microbiology, Sir J. J. Group of Hospitals, Mumbai 400008, India. ^[2] Thyrocare Technologies Pvt. Ltd, Navi Mumbai 400703, India. ^[3] Department of Microbiology, Tata Medical Center, 14, MAR(E-W), DH Block (Newtown), Action Area I, Newtown, Kolkata, Chakpachuria 700160, India. ^[4] Department of Microbiology, Breach Candy Hospital and Research Center, Mumbai 400026, India. ^[5] Department of Bioscience and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India. ^[6]

关键词 antibiotic resistance gene bioinformatics clinical genomics genomics infectious disease nanopore sequencing next-generation sequencing

主题词人类(Humans);细菌(Bacteria);真菌(Fungi);计算生物学(Computational Biology);基因组学(Genomics);高通量核苷酸序列分析(High-Throughput Nucleotide Sequencing)

DOI 10.1093/jambio/lxae037

PMID 38346849

发布时间 2024-02-26

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