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Compression Algorithm for Colored de Bruijn Graphs.

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第一作者： Amatur,Rahman

第一单位： Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, USA.

作者： Amatur,Rahman ^[1] ; Yoann,Dufresne ^[2] ; Paul,Medvedev ^[3]

作者单位： Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, USA. ^[1] Institut Pasteur, Université Paris Cité, G5 Sequence Bioinformatics, Paris, France.;Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, F-75015 Paris, France. ^[2] Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, USA.;Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.;Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA. ^[3]

关键词 Applied computing → Computational biology colored de Bruijn graphs disk compression k-mer sets simplitigs spectrum-preserving string sets

DOI 10.4230/LIPIcs.WABI.2023.17

PMID 38712341

发布时间 2025-09-19

基金项目

R01 GM146462/GM/NIGMS NIH HHS/United States

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