RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci.

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作者： Anish M S,Shrestha ^[1] ; Mark Edward M,Gonzales ^[2] ; Phoebe Clare L,Ong ^[2] ; Pierre,Larmande ^[3] ; Hyun-Sook,Lee ^[4] ; Ji-Ung,Jeung ^[4] ; Ajay,Kohli ^[5] ; Dmytro,Chebotarov ^[5] ; Ramil P,Mauleon ^[5] ; Jae-Sung,Lee ^[5] ; Kenneth L,McNally ^[5]

作者单位： Bioinformatics Lab, Advanced Research Institute for Informatics, Computing and Networking, College of Computer Studies, De La Salle University, Manila 1004, Philippines.;International Rice Research Institute (IRRI), Metro Manila 1301, Philippines. ^[1] Bioinformatics Lab, Advanced Research Institute for Informatics, Computing and Networking, College of Computer Studies, De La Salle University, Manila 1004, Philippines. ^[2] DIADE, Univ Montpellier, Cirad, IRD, 34394 Montpellier, France. ^[3] National Institute of Crop Science, Wanju-gun 55365, Republic of Korea. ^[4] International Rice Research Institute (IRRI), Metro Manila 1301, Philippines. ^[5]

关键词 GWAS QTL analysis coexpression network post-GWAS rice text mining transcription factor binding

主题词数量性状基因座位(Quantitative Trait Loci);全基因组关联研究(Genome-Wide Association Study);数据挖掘(Data Mining);软件(Software);表观基因组学(Epigenomics);计算生物学(Computational Biology);多态性, 单核苷酸(Polymorphism, Single Nucleotide);基因组学(Genomics);基因组, 植物(Genome, Plant);染色体图(Chromosome Mapping);数据库, 遗传学(Databases, Genetic)

DOI 10.1093/gigascience/giae013

PMID 38832465

发布时间 2024-07-24

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RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci.

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RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci.

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