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PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training.

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第一作者： Emma J,Griffiths

第一单位： Centre for Infectious Disease Genomics and One Health, Faculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada.

作者： Emma J,Griffiths ^[1] ; Inês,Mendes ^[2] ; Finlay,Maguire ^[3] ; Jennifer L,Guthrie ^[4] ; Bryan A,Wee ^[5] ; Sarah,Schmedes ^[6] ; Kathryn,Holt ^[7] ; Chanchal,Yadav ^[7] ; Rhiannon,Cameron ^[1] ; Charlotte,Barclay ^[1] ; Damion,Dooley ^[1] ; Duncan,MacCannell ^[6] ; Leonid,Chindelevitch ^[8] ; Ilene,Karsch-Mizrachi ^[9] ; Zahra,Waheed ^[10] ; Lee,Katz ^[11] ; Robert,Petit Iii ^[12] ; Mugdha,Dave ^[13] ; Paul,Oluniyi ^[14] ; Muhammad Ibtisam,Nasar ^[15] ; Amogelang,Raphenya ^[16] ; William W L,Hsiao ^[1] ; Ruth E,Timme ^[17]

作者单位： Centre for Infectious Disease Genomics and One Health, Faculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada. ^[1] Theiagen Genomics, LLC, Highlands Ranch, Colorado, USA. ^[2] Department of Community Health & Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada, and Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada. ^[3] Department of Microbiology & Immunology, Western University, London, Ontario, Canada. ^[4] The Roslin Institute, University of Edinburgh, Edinburgh, UK. ^[5] National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Georgia, USA. ^[6] National Microbiology Laboratory, Public health Agency of Canada, Winnipeg, MB, Canada. ^[7] Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK.;MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, UK. ^[8] National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA. ^[9] European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK. ^[10] Center for Food Safety, University of Georgia, Georgia, USA. ^[11] Wyoming Public Health Laboratory, Wyoming, USA. ^[12] McMaster University, Hamilton, Ontario, Canada. ^[13] Chan Zuckerberg Biohub, San Francisco, CA, USA. ^[14] Department of Biology, College of Science, United Arab Emirates University- AL Ain, Abu Dhabi, UAE. ^[15] Michael G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada. ^[16] Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, Maryland, USA. ^[17]

关键词 contextual data data sharing public health genomics quality control reference datasets