Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data.
第一作者:
Abzer K,Pakkir Shah
第一单位:
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine, Tübingen, Germany.
作者:
Abzer K,Pakkir Shah [1]
;
Axel,Walter [2]
;
Filip,Ottosson [3]
;
Francesco,Russo [3]
;
Marcelo,Navarro-Diaz [4]
;
Judith,Boldt [5]
;
Jarmo-Charles J,Kalinski [6]
;
Eftychia Eva,Kontou [7]
;
James,Elofson [8]
;
Alexandros,Polyzois [9]
;
Carolina,González-Marín [10]
;
Shane,Farrell [11]
;
Marie R,Aggerbeck [12]
;
Thapanee,Pruksatrakul [13]
;
Nathan,Chan [14]
;
Yunshu,Wang [14]
;
Magdalena,Pöchhacker [15]
;
Corinna,Brungs [16]
;
Beatriz,Cámara [17]
;
Andrés Mauricio,Caraballo-Rodríguez [18]
;
Andres,Cumsille [17]
;
Fernanda,de Oliveira [19]
;
Kai,Dührkop [20]
;
Yasin,El Abiead [18]
;
Christian,Geibel [4]
;
Lana G,Graves [21]
;
Martin,Hansen [22]
;
Steffen,Heuckeroth [23]
;
Simon,Knoblauch [4]
;
Anastasiia,Kostenko [8]
;
Mirte C M,Kuijpers [24]
;
Kevin,Mildau [25]
;
Stilianos,Papadopoulos Lambidis [4]
;
Paulo Wender,Portal Gomes [18]
;
Tilman,Schramm [26]
;
Karoline,Steuer-Lodd [26]
;
Paolo,Stincone [4]
;
Sibgha,Tayyab [4]
;
Giovanni Andrea,Vitale [4]
;
Berenike C,Wagner [4]
;
Shipei,Xing [18]
;
Marquis T,Yazzie [8]
;
Simone,Zuffa [27]
;
Martinus,de Kruijff [28]
;
Christine,Beemelmanns [29]
;
Hannes,Link [4]
;
Christoph,Mayer [4]
;
Justin J J,van der Hooft [30]
;
Tito,Damiani [16]
;
Tomáš,Pluskal [16]
;
Pieter,Dorrestein [18]
;
Jan,Stanstrup [31]
;
Robin,Schmid [32]
;
Mingxun,Wang [33]
;
Allegra,Aron [34]
;
Madeleine,Ernst [35]
;
Daniel,Petras [36]
作者单位:
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine, Tübingen, Germany.
[1]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine, Tübingen, Germany.;Applied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen, Germany.
[2]
Section for Clinical Mass Spectrometry, Danish Center for Neonatal Screening, Department of Congenital Disorders, Statens Serum Institut, Copenhagen S, Denmark.
[3]
University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine, Tübingen, Germany.
[4]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.;German Center for Infection Research, Partner Site Braunschweig-Hannover, Braunschweig, Germany.
[5]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Department of Biochemistry and Microbiology, Rhodes University, Makhanda, South Africa.
[6]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;The Novo Nordisk Foundation for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
[7]
Department of Chemistry and Biochemistry, University of Denver, Denver, CO, USA.
[8]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Boyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
[9]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Universidad EAFIT, Medellín, Antioquia, Colombia.
[10]
Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.;School of Marine Sciences, Darling Marine Center, University of Maine, Walpole, ME, USA.
[11]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Department of Environmental Science, Aarhus University, Roskilde, Denmark.
[12]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Thailand Science Park, Pathum Thani, Thailand.
[13]
Department of Computer Science, University of California Riverside, Riverside, CA, USA.
[14]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Department of Food Chemistry and Toxicology, University of Vienna, Vienna, Austria.
[15]
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
[16]
Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Centro de Biotecnología DAL, Universidad Técnica Federico Santa María, Valparaíso, Chile.
[17]
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.
[18]
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.;Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Lorena, São Paulo, Brazil.
[19]
Department of Bioinformatics, University of Jena, Jena, Germany.
[20]
Department of Environmental Systems Analysis, University of Tübingen, Tübingen, Germany.;Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany.
[21]
Department of Environmental Science, Aarhus University, Roskilde, Denmark.
[22]
Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany.
[23]
Department of Ecology, Behavior and Evolution, University of California San Diego, San Diego, CA, USA.
[24]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Department of Analytical Chemistry, University of Vienna, Vienna, Austria.;Bioinformatics Group, Wageningen University and Research, Wageningen, the Netherlands.
[25]
University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine, Tübingen, Germany.;Department of Biochemistry, University of California Riverside, Riverside, CA, USA.
[26]
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.;Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.
[27]
Helmholtz Institute for Pharmaceutical Research Saarland, Helmholtz Centre for Infection Research, Saarbrücken, Germany.
[28]
Helmholtz Institute for Pharmaceutical Research Saarland, Helmholtz Centre for Infection Research, Saarbrücken, Germany.;Saarland University, Saarbrücken, Germany.
[29]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Bioinformatics Group, Wageningen University and Research, Wageningen, the Netherlands.;Department of Biochemistry, University of Johannesburg, Johannesburg, South Africa.
[30]
Department of Nutrition, Exercise and Sports, University of Copenhagen, Frederiksberg C, Denmark.
[31]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
[32]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Department of Computer Science, University of California Riverside, Riverside, CA, USA.
[33]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA.;Department of Chemistry and Biochemistry, University of Denver, Denver, CO, USA.
[34]
Section for Clinical Mass Spectrometry, Danish Center for Neonatal Screening, Department of Congenital Disorders, Statens Serum Institut, Copenhagen S, Denmark. MAET@ssi.dk.
[35]
Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA. dpetras@ucr.edu.;University of Tübingen, Interfaculty Institute of Microbiology and Infection Medicine, Tübingen, Germany. dpetras@ucr.edu.;Department of Biochemistry, University of California Riverside, Riverside, CA, USA. dpetras@ucr.edu.
[36]
主题词
色谱法, 液相(Chromatography, Liquid);数据说明, 统计(Data Interpretation, Statistical);代谢组学(Metabolomics);软件(Software);串联质谱法(Tandem Mass Spectrometry)
DOI
10.1038/s41596-024-01046-3
PMID
39304763
发布时间
2025-01-10
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Nature protocols
Nature protocols
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