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Estimation of substitution and indel rates via <i>k</i>-mer statistics.

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第一作者： Mahmudur Rahman,Hera

第一单位： School of Electrical Engineering and Computer Science, Pennsylvania State University, USA.

作者： Mahmudur Rahman,Hera ^[1] ; Paul,Medvedev ^[2] ; David,Koslicki ^[3] ; Antonio,Blanca ^[1]

作者单位： School of Electrical Engineering and Computer Science, Pennsylvania State University, USA. ^[1] Department of Computer Science and Engineering, The Pennsylvania State University, University Park, USA.;Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, USA.;Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, USA. ^[2] School of Electrical Engineering and Computer Science, Pennsylvania State University, USA.;Department of Biology, Pennsylvania State University, USA.;Huck Institutes of the Life Sciences, Pennsylvania State University, USA. ^[3]

关键词 Applied computing → Computational biology Mathematics of computing → Probabilistic inference problems Theory of computation → Theory and algorithms for application domains alignment-free deletion estimation indel insertion k-mers mutation rate substitution

DOI 10.4230/LIPIcs.WABI.2025.16

PMID 42022475

发布时间 2026-04-28

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Estimation of substitution and indel rates via <i>k</i>-mer statistics.

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