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Genotyping Characteristics of Human Fecal Escherichia coli and Their Association with Multidrug Resistance in Miyun District, Beijing

摘要Objective To explore the genotyping characteristics of human fecal Escherichia coli (E. coli) and the relationships between antibiotic resistance genes (ARGs) and multidrug resistance (MDR) of E. coli in Miyun District, Beijing, an area with high incidence of infectious diarrheal cases but no related data. Methods Over a period of 3 years, 94 E. coli strains were isolated from fecal samples collected from Miyun District Hospital, a surveillance hospital of the National Pathogen Identification Network. The antibiotic susceptibility of the isolates was determined by the broth microdilution method. ARGs, multilocus sequence typing (MLST), and polymorphism trees were analyzed using whole-genome sequencing data (WGS). Results This study revealed that 68.09% of the isolates had MDR, prevalent and distributed in different clades, with a relatively high rate and low pathogenicity. There was no difference in MDR between the diarrheal (49/70) and healthy groups (15/24). Conclusion We developed a random forest (RF) prediction model of TEM.1 + baeR + mphA + mphB + QnrS1 + AAC.3-IId to identify MDR status, highlighting its potential for early resistance identification. The causes of MDR are likely mobile units transmitting the ARGs. In the future, we will continue to strengthen the monitoring of ARGs and MDR, and increase the number of strains to further verify the accuracy of the MDR markers.

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作者 ZHANG Wei Wei [1] ZHU Xiao Lin [2] DENG Le Le [3] HAN Ya Jun [3] LI Zhuo Wei [3] WANG Jin Long [4] CHEN Yong Liang [5] WANG Ao Lin [5] TIAN Er Li [5] CHENG Bin [6] XU Lin Hua [7] CHEN Yi Cong [7] TIAN Li Li [5] HE Guang Xue [3] 学术成果认领
作者单位 National Institute for Viral Disease Control and Prevention,Chinese Center for Disease Control and Prevention,Beijing 102206,China;Miyun District Center for Disease Control and Prevention,Beijing 101520,China [1] Berger Bioengineering Co.,Ltd,Shanghai 201401,China [2] National Institute for Viral Disease Control and Prevention,Chinese Center for Disease Control and Prevention,Beijing 102206,China [3] Xicheng District Commission of Health of BeijingMunicipality,Beijing 100044,China [4] Miyun District Center for Disease Control and Prevention,Beijing 101520,China [5] Miyun District Hospital,Beijing 101520,China [6] Hebei North University,Zhangjiakou 075000,Heibei,China [7]
栏目名称 Original Articles
DOI 10.3967/bes2023.050
发布时间 2023-06-02
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