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Molecular characterization of the A52 murine hepatocellular carcinoma cell line

摘要Background:To combat hepatocellular carcinoma(HCC)disease heterogeneity and growing mortality,there is an urgent need for targeted and personalized therapeutics.While syngeneic mouse models are commonly used for preclinical validation of these therapeutics,the lack of genetically characterized murine cell lines adds uncertainty to the study of drug-gene interactions in these models.We previously generated a novel murine cell line,A52,from a diethylnitrosamine(DEN)-induced adiponectin-knockout mouse model.Here,we present a comprehensive genomic and transcrip-tomic characterization of the A52 cell line.Methods:A52 cells were grown in various culture medium compositions to inves-tigate robustness to simple media.Whole-genome sequencing(WGS)and RNAseq were performed on A52 cells from both cell culture and syngeneic tumor tissue,as well as a reference cell line representing non-tumor cells,AML-12.Results:A52 was found to show robust growth in all medium compositions.Substantial chromosomal instability was observed in A52,including trisomy 15 and notable am-plifications of oncogenic loci such as Myc and Cd274(PDL-1),alongside frequent small variants and structural rearrangements.Notably,the cell line harbors the common HCC driver Braf V584E mutation,and a novel Plk1 p.R364W variant predicted as a driver mutation.Transcriptomic profiling defined a distinct"A52 gene signature"enriched in EGFR-ERBB signaling and cell migration pathways.Integrative analyses demonstrated that the A52 gene signature aligns closely with a subset of human HCC lacking CTNNB1 mutations.Conclusion:This study provides a critical genetic resource,facilitating more precise preclinical modeling and therapeutic validation in HCC.

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作者单位 Department of Biomedical Sciences and Molecular and Cell Biology,College of Medicine and Dentistry,College of Science and Engineering,James Cook University,Townsville,Queensland,Australia;Centre for Tropical Bioinformatics and Molecular Biology,James Cook University,Cairns,Queensland,Australia;Australian Institute for Tropical Health and Medicine,Townsville,Queensland,Australia [1] Department of Biomedical Sciences and Molecular and Cell Biology,College of Medicine and Dentistry,College of Science and Engineering,James Cook University,Townsville,Queensland,Australia [2] Department of Biomedical Sciences and Molecular and Cell Biology,College of Medicine and Dentistry,College of Science and Engineering,James Cook University,Townsville,Queensland,Australia;Centre for Tropical Bioinformatics and Molecular Biology,James Cook University,Cairns,Queensland,Australia;Australian Institute for Tropical Health and Medicine,Townsville,Queensland,Australia;Immunogenomics Lab,Garvan Institute of Medical Research,Darlinghurst,New South Wales,Australia;Menzies School of Health Research,Charles Darwin University,Darwin,Northern Territory,Australia [3] Department of Biomedical Sciences and Molecular and Cell Biology,College of Medicine and Dentistry,College of Science and Engineering,James Cook University,Townsville,Queensland,Australia;Centre for Tropical Bioinformatics and Molecular Biology,James Cook University,Cairns,Queensland,Australia;Australian Institute for Tropical Health and Medicine,Townsville,Queensland,Australia;Faculty of Medicine & Health,The University of Sydney,Camperdown,New South Wales,Australia [4] Department of Biomedical Sciences and Molecular and Cell Biology,College of Medicine and Dentistry,College of Science and Engineering,James Cook University,Townsville,Queensland,Australia;Centre for Tropical Bioinformatics and Molecular Biology,James Cook University,Cairns,Queensland,Australia;Australian Institute for Tropical Health and Medicine,Townsville,Queensland,Australia;Storr Liver Centre,Westmead Institute for Medical Research,Westmead Hospital and University of Sydney,Sydney,New South Wales,Australia Lionel Hebbard,Discipline of Molecular and Cell Biology,Townsville,QLD 4811,Australia [5]
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DOI 10.1002/ame2.70152
发布时间 2026-07-06(万方平台首次上网日期,不代表论文的发表时间)
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