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MonkeyTrail:A scalable video-based method for tracking macaque movement trajectory in daily living cages

摘要Behavioral analysis of macaques provides important experimental evidence in the field of neuroscience.In recent years,video-based automatic animal behavior analysis has received widespread attention.However,methods capable of extracting and analyzing daily movement trajectories of macaques in their daily living cages remain underdeveloped,with previous approaches usually requiring specific environments to reduce interference from occlusion or environmental change.Here,we introduce a novel method,called MonkeyTrail,which satisfies the above requirements by frequently generating virtual empty backgrounds and using background subtraction to accurately obtain the foreground of moving animals.The empty background is generated by combining the frame difference method(FDM)and deep learning-based model(YOLOv5).The entire setup can be operated with low-cost hardware and can be applied to the daily living environments of individually caged macaques.To test MonkeyTrail performance,we labeled a dataset containing>8 000 video frames with the bounding boxes of macaques under various conditions as ground-truth.Results showed that the tracking accuracy and stability of MonkeyTrail exceeded that of two deep learning-based methods(YOLOv5 and Single-Shot MultiBox Detector),traditional frame difference method,and naive background subtraction method.Using MonkeyTrail to analyze Iong-term surveillance video recordings,we successfully assessed changes in animal behavior in terms of movement amount and spatial preference.Thus,these findings demonstrate that MonkeyTrail enables low-cost,large-scale daily behavioral analysis of macaques.

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作者 Meng-Shi Liu [1] Jin-Quan Gao [2] Gu-Yue Hu [1] Guang-Fu Hao [1] Tian-Zi Jiang [3] Chen Zhang [4] Shan Yu [1] 学术成果认领
作者单位 Brainnetome Center,Institute of Automation,Chinese Academy of Sciences,Beijing 100190,China;National Laboratory of Pattern Recognition,Institute of Automation,Chinese Academy of Sciences,Beijing 100190,China;School of Artificial Intelligence,University of Chinese Academy of Sciences,Beijing 101408,China [1] Technology Management Center,SAFE Pharmaceutical Technology Co.,Ltd.,Beijing 100176,China;Model R&D Center,Beijing Life Biosciences Co.,Ltd.,Beijing 100176,China [2] Brainnetome Center,Institute of Automation,Chinese Academy of Sciences,Beijing 100190,China;National Laboratory of Pattern Recognition,Institute of Automation,Chinese Academy of Sciences,Beijing 100190,China;School of Artificial Intelligence,University of Chinese Academy of Sciences,Beijing 101408,China;Key Laboratory for NeuroInformation of Ministry of Education,School of Life Science and Technology,University of Electronic Science and Technology of China,Chengdu,Sichuan 611731,China [3] Department of Neurobiology,School of Basic Medical Sciences,Beijing Key Laboratory of Neural Regeneration and Repair,and Advanced Innovation Center for Human Brain Protection,Capital Medical University,Beijing 100069,China [4]
发布时间 2022-08-01(万方平台首次上网日期,不代表论文的发表时间)
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动物学研究

动物学研究

2022年43卷3期

343-351页

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