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Single-cell sequencing analysis reveals the essential role of the m6A reader YTHDF1 in retinal visual function by regulating TULP1 and DHX38 translation

摘要N6-methyladenosine(m6A)modification of mRNA is a critical post-transcriptional regulatory mechanism that modulates mRNA metabolism and neuronal function.The m6A reader YTHDF1 has been shown to enhance the translational efficiency of m6A-modified mRNAs in the brain and is essential for learning and memory.However,its role in the mature retina remains unclear.Herein,we report a novel role of Ythdf1 in the maintenance of retinal function using a genetic knockout model.Loss of Ythdf1 resulted in impaired scotopic electroretinogram(ERG)responses and progressive retinal degeneration.Detailed analyses of rod photoreceptors confirmed substantial degenerative changes in the absence of ciliary defects.Single-cell RNA sequencing revealed comprehensive molecular alterations across all retinal cell types in Ythdf1-deficient retinas.Integrative analysis of methylated RNA immunoprecipitation(MeRIP)sequencing and RIP sequencing identified Tulp1 and Dhx38,two inheritable retinal degeneration disease-associated gene homologs,as direct targets of YTHDF1 in the retina.Specifically,YTHDF1 recognized and bound m6A-modified Tulp1 and Dhx38 mRNA at the coding sequence(CDS),enhancing their translational efficiency without altering mRNA levels.Collectively,these findings highlight the essential role of YTHDF1 in preserving visual function and reveal a novel regulatory mechanism of m6A reader proteins in retinal degeneration,identifying potential therapeutic targets for severe retinopathies.

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作者单位 Henan Branch of National Clinical Research Center for Ocular Diseases,Henan Eye Hospital,People's Hospital of Zhengzhou University,Henan Provincial People's Hospital,Zhengzhou,Henan 450003,China;Sichuan Provincial Key Laboratory for Human Disease Gene Study,Center for Medical Genetics,Sichuan Provincial People's Hospital,University of Electronic Science and Technology of China,Chengdu,Sichuan 610072,China;Sichuan-Chongqing Joint Key Laboratory for Pathology and Laboratory Medicine,Jinfeng Laboratory,Chongqing 400039,China;Qinghai Key Laboratory of Qinghai Tibet Plateau Biological Resources,Chinese Academy of Sciences and Qinghai Provincial Key Laboratory of Tibetan Medicine Research,Northwest Institute of Plateau Biology,Xining,Qinghai 810008,China [1] Sichuan Provincial Key Laboratory for Human Disease Gene Study,Center for Medical Genetics,Sichuan Provincial People's Hospital,University of Electronic Science and Technology of China,Chengdu,Sichuan 610072,China [2] Sichuan Provincial Key Laboratory for Human Disease Gene Study,Center for Medical Genetics,Sichuan Provincial People's Hospital,University of Electronic Science and Technology of China,Chengdu,Sichuan 610072,China;Sichuan-Chongqing Joint Key Laboratory for Pathology and Laboratory Medicine,Jinfeng Laboratory,Chongqing 400039,China [3] Henan Branch of National Clinical Research Center for Ocular Diseases,Henan Eye Hospital,People's Hospital of Zhengzhou University,Henan Provincial People's Hospital,Zhengzhou,Henan 450003,China;Eye Institute,Henan Academy of Innovations in Medical Science,Zhengzhou,Henan 451162,China [4] Sichuan Provincial Key Laboratory for Human Disease Gene Study,Center for Medical Genetics,Sichuan Provincial People's Hospital,University of Electronic Science and Technology of China,Chengdu,Sichuan 610072,China;Qinghai Key Laboratory of Qinghai Tibet Plateau Biological Resources,Chinese Academy of Sciences and Qinghai Provincial Key Laboratory of Tibetan Medicine Research,Northwest Institute of Plateau Biology,Xining,Qinghai 810008,China [5]
DOI 10.24272/j.issn.2095-8137.2024.399
发布时间 2025-12-17(万方平台首次上网日期,不代表论文的发表时间)
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动物学研究

动物学研究

2025年46卷2期

429-445页

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