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Molecular Evolution of VEF-Domain-Containing PcG Genes in Plants

摘要Arabidopsis VERNALIZATION2 (VRN2),EMBRYONIC FLOWER2 (EMF2),and FERTILIZATION-INDEPENDENT SEED2 (FIS2) are involved in vernalization-mediated flowering,vegetative development,and seed development,respectively.Together with Arabidopsis VEF-L36,they share a VEF domain that is conserved in plants and animals.To investigate the evolution of VEF-domain-containing genes (VEF genes),we analyzed sequences related to VEF genes across land plants.To date,24 full-length sequences from 11 angiosperm families and 54 partial sequences from another nine families were identified.The majority of the full-length sequences identified share greatest sequence similarity with and possess the same major domain structure as Arabidopsis EMF2.EMF2-like sequences are not only widespread among angiosperms,but are also found in genomic sequences of gymnosperms,lycophyte,and moss.No FIS2- or VEF-L36-like sequences were recovered from plants other than Arabidopsis,including from rice and poplar for which whole genomes have been sequenced.Phylogenetic analysis of the full-length sequences showed a high degree of amino acid sequence conservation in EMF2 homologs of closely related taxa.VRN2 homologs are recovered as a clade nested within the larger EMF2 clade.FIS2 and VEF-L36 are recovered in the VRN2 clade.VRN2 clade may have evolved from an EMF2 duplication event that occurred in the rosids prior to the divergence of the eurosid Ⅰ and eurosid Ⅱ lineages.We propose that dynamic changes in genome evolution contribute to the generation of the family of VEF-domain-containing genes.Phyiogenetic analysis of the VEF domain alone showed that VEF sequences continue to evolve following EMF2/VRN2 divergence in accordance with species relationship.Existence of EMF2-like sequences in animals and across land plants suggests that a prototype form of EMF2 was present prior to the divergence of the plant and animal lineages.A proposed sequence of events,based on domain organization and occurrence of intermediate sequences throughout angiosperms,could explain VRN2 evolution from an EMF2-like ancestral sequence,possibly following duplication of the ancestral EMF2.Available data further suggest that VEF-L36 and FIS2 were derived from a VRN2-like ancestral sequence.Thus,the presence of VEF-L36 and FIS2 in a genome may ultimately be dependent upon the presence of a VRN2-like sequence.

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作者单位 Department of Plant and Microbial Biology,University of California,Berkeley,CA 94720-3102,USA [1]
分类号 Q94(植物学)
DOI 10.1093/mp/ssp032
发布时间 2009-09-23(万方平台首次上网日期,不代表论文的发表时间)
基金项目
国家自然科学基金((IBN 0236399)) USDA((03-35301-13244))
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分子植物(英文版)

分子植物(英文版)

2009年2卷4期

738-754页

SCIMEDLINEISTICCSCDCABP

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