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A Genomic Variation Map Provides Insights into the Genetic Basis of Spring Chinese Cabbage (Brassica rapa ssp.pekinensis) Selection

摘要Chinese cabbage is the most consumed leafy crop in East Asian countries.However,premature bolting induced by continuous low temperatures severely decreases the yield and quality of the Chinese cabbage,and therefore restricts its planting season and geographic distribution.In the past 40 years,spring Chinese cabbage with strong winterness has been selected to meet the market demand.Here,we report a genome variation map of Chinese cabbage generated from the resequencing data of 194 geographically diverse accessions of three ecotypes.In-depth analyses of the selection sweeps and genome-wide patterns revealed that spring Chinese cabbage was selected from a specific population of autumn Chinese cabbage around the area of Shandong peninsula in northern China.We identified 23 genomic loci that underwent intensive selection,and further demonstrated by gene expression and haplotype analyses that the incorporation of elite alleles of VERNALISATION INSENTIVE 3.1 (BrVlN3.1) and FLOWER LOCUS C 1 (BrFLC1) is a determinant genetic source of variation during selection.Moreover,we showed that the quantitative response of BrVIN3.1 to cold due to the sequence variations in the cis elements of the BrVlN3.1 promoter significantly contributes to bolting-time variation in Chinese cabbage.Collectively,our study provides valuable insights into the genetic basis of spring Chinese oabbage selection and will facilitate the breeding of bolting-resistant varieties by molecular-marker-assisted selection,transgenic or gene editing approaches.

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作者单位 Beijing Vegetable Research Center(BVRC), Beijing Academy of Agriculture and Forestry Science(BAAFS), Beijing 100097, China;Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, UK;Key Laboratory of Biology and Genetic Improvement of Horticultural Crops(North China), Ministry of Agriculture, Beijing 100097, China;Beijing Key Laboratory of Vegetable Germplasm Improvement, Beijing 100097, China [1] Beijing Vegetable Research Center(BVRC), Beijing Academy of Agriculture and Forestry Science(BAAFS), Beijing 100097, China;Key Laboratory of Biology and Genetic Improvement of Horticultural Crops(North China), Ministry of Agriculture, Beijing 100097, China;Beijing Key Laboratory of Vegetable Germplasm Improvement, Beijing 100097, China [2] Beijing Key Laboratory of Vegetable Germplasm Improvement, Beijing 100097, China [3] Key Laboratory of Biology and Genetic Improvement of Horticultural Crops(North China), Ministry of Agriculture, Beijing 100097, China [4] Beijing Vegetable Research Center(BVRC), Beijing Academy of Agriculture and Forestry Science(BAAFS), Beijing 100097, China [5] Biomarker Technologies Corporation, Beijing, China [6]
栏目名称 Research Articles
发布时间 2019-01-18
基金项目
grants from the National Natural Science Foundation of China the National Key Research and Development Program of China the Natural Science Foundation of Beijing Municipality the Earmarked Fund for China Agriculture Research System
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2018年11卷11期

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