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Genomic insights into the origin,adaptive evolution,and herbicide resistance of Leptochloa chinensis,a devastating tetrapioid weedy grass in rice fields

摘要Chinese sprangletop(Leptochloa chinensis),belonging to the grass subfamily Chloridoideae,is one of the most notorious weeds in rice ecosystems.Here,we report a chromosome-scale reference genome assembly and a genomic variation map of the tetrapioid L.chinensis.The L.chinensis genome is derived from two diploid progenitors that diverged~10.9 million years ago,and its two subgenomes display neither fractionation bias nor overall gene expression dominance.Comparative genomic analyses reveal substantial genome rearrangements in L.chinensis after its divergence from the common ancestor of Chloridoideae and,together with transcriptome profiling,demonstrate the important contribution of tet-raploidization to the gene sources for the herbicide resistance of L.chinensis.Population genomic ana-lyses of 89 accessions from China reveal that L.chinensis accessions collected from southern/south-western provinces have substantially higher nucleotide diversity than those from the middle and lower reaches of the Yangtze River,suggesting that L.chinensis spread in China from the southern/south-western provinces to the middle and lower reaches of the Yangtze River.During this spread,L.chinensis developed significantly increased herbicide resistance,accompanied by the selection of numerous genes involved in herbicide resistance.Taken together,our study generated valuable genomic resources for future fundamental research and agricultural management of L.chinensis,and provides significant new insights into the herbicide resistance as well as the origin and adaptive evolution of L.chinensis.

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作者 Lifeng Wang [1] Xuepeng Sun [2] Yajun Peng [1] Ke Chen [1] Shan Wu [3] Yanan Guo [1] Jingyuan Zhang [4] Haona Yang [1] Tao Jin [4] Lamei Wu [1] Xiaomao Zhou [5] Bin Liang [5] Zhenghong Zhao [6] Ducai Liu [5] Zhangjun Fei [7] Lianyang Bai [1] 学术成果认领
作者单位 State Key Laboratory of Hybrid Rice,Hunan Academy of Agricultural Sciences,Changsha 410125,China;Hunan Weed Science Key Laboratory,Hunan Academy of Agricultural Sciences,Changsha 410125,China [1] Boyce Thompson Institute,Cornell University,Ithaca,NY 14853,USA;College of Horticulture Science,Zhejiang A&F University,Hangzhou 311300,China [2] Boyce Thompson Institute,Cornell University,Ithaca,NY 14853,USA [3] Qingdao Kingagroot Compounds Co.Ltd,Qingdao 266000,China [4] State Key Laboratory of Hybrid Rice,Hunan Academy of Agricultural Sciences,Changsha 410125,China [5] Hunan Weed Science Key Laboratory,Hunan Academy of Agricultural Sciences,Changsha 410125,China [6] Boyce Thompson Institute,Cornell University,Ithaca,NY 14853,USA;USDA-ARS,Robert W.Holley Center for Agriculture and Health,Ithaca,NY 14853,USA [7]
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发布时间 2022-08-23(万方平台首次上网日期,不代表论文的发表时间)
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分子植物(英文版)

分子植物(英文版)

2022年15卷6期

1045-1058页

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