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Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism

摘要Orobanchaceae is the largest family of parasitic plants,containing autotrophic and parasitic plants with all degrees of parasitism.This makes it by far the best family for studying the origin and evolution of plant parasitism.Here we provide three high-quality genomes of orobanchaceous plants,the autotrophic Lindenbergia luchunensis and the holoparasitic plants Phelipanche aegyptiaca and Orobanche cumana.Phylogenomic analysis of these three genomes together with those previously published and the transcrip-tomes of other orobanchaceous species created a robust phylogenetic framework for Orobanchaceae.We found that an ancient whole-genome duplication(WGD;about 73.48 million years ago),which occurred earlier than the origin of Orobanchaceae,might have contributed to the emergence of parasitism.However,no WGD events occurred in any lineage of orobanchaceous parasites except for Striga after divergence from their autotrophic common ancestor,suggesting that,in contrast with previous speculations,WGD is not associated with the emergence of holoparasitism.We detected evident convergent gene loss in all parasites within Orobanchaceae and between Orobanchaceae and dodder Cuscuta australis.The gene families in the orobanchaceous parasites showed a clear pattern of recent gains and expansions.The expanded gene families are enriched in functions related to the development of the haustorium,sug-gesting that recent gene family expansions may have facilitated the adaptation of orobanchaceous parasites to different hosts.This study illustrates a stepwise pattern in the evolution of parasitism in the orobanchaceous parasites and will facilitate future studies on parasitism and the control of parasitic plants in agriculture.

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作者 Yuxing Xu [1] Jingxiong Zhang [1] Canrong Ma [2] Yunting Lei [1] Guojing Shen [1] Jianjun Jin [3] Deren A.R.Eaton [3] Jianqiang Wu [2] 学术成果认领
作者单位 Department of Economic Plants and Biotechnology,Yunnan Key Laboratory for Wild Plant Resources,Kunming Institute of Botany,Chinese Academy of Sciences,Kunming 650201,China [1] Department of Economic Plants and Biotechnology,Yunnan Key Laboratory for Wild Plant Resources,Kunming Institute of Botany,Chinese Academy of Sciences,Kunming 650201,China;CAS Center for Excellence in Biotic Interactions,University of Chinese Academy of Sciences,Beijing 100049,China [2] Department of Ecology,Evolution and Environmental Biology,Columbia University,New York,NY 10027,USA [3]
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发布时间 2022-11-10(万方平台首次上网日期,不代表论文的发表时间)
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分子植物(英文版)

分子植物(英文版)

2022年15卷8期

1384-1399页

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