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Nanopore ultra-long sequencing and adaptive sampling spur plant complete telomere-to-telomere genome assembly

摘要The pursuit of complete telomere-to-telomere(T2T)genome assembly in plants,challenged by genomic complexity,has been advanced by Oxford Nanopore Technologies(ONT),which offers ultra-long,real-time sequencing.Despite its promise,sequencing length and gap filling remain significant challenges.This study optimized DNA extraction and library preparation,achieving DNA lengths exceeding 485 kb;average N50 read lengths of 80.57 kb,reaching up to 440 kb;and maximum reads of 5.83 Mb.Importantly,we demonstrated that combining ultra-long sequencing and adaptive sampling can effectively fill gaps dur-ing assembly,evidenced by successfully filling the remaining gaps of a near-complete Arabidopsis genome assembly and resolving the sequence of an unknown telomeric region in watermelon genome.Collectively,our strategies improve the feasibility of complete T2T genomic assemblies across various plant species,enhancing genome-based research in diverse fields.

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作者 Dongdong Lu [1] Caijuan Liu [1] Wenjun Ji [1] Ruiyan Xia [1] Shanshan Li [1] Yanxia Liu [1] Naixu Liu [1] Yongqi Liu [1] Xing Wang Deng [1] Bosheng Li [1] 学术成果认领
作者单位 Shandong Key Laboratory of Precision Molecular Crop Design and Breeding,Peking University Institute of Advanced Agricultural Sciences,Shandong Laboratory of Advanced Agricultural Sciences in Weifang,Shandong 261325,China [1]
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DOI 10.1016/j.molp.2024.10.008
发布时间 2025-01-14(万方平台首次上网日期,不代表论文的发表时间)
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分子植物(英文版)

分子植物(英文版)

2024年17卷11期

1773-1786页

SCIMEDLINEISTICCSCDCABP

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