宁波市2022年新报告HIV-1感染者毒株基因型及耐药研究
HIV-1 genetic characteristics and drug resistance in newly reported HIV-1 infected people in Ningbo in 2022
摘要目的:了解宁波市2022年新报告HIV-1感染者毒株基因型特征和原发耐药情况。方法:收集2022年1—12月宁波市新报告HIV-1感染者ART治疗前血浆,提取RNA,反转录后巢氏PCR扩增HIV-1 pol基因片段,系统进化分析鉴定基因亚型,同时提交序列至斯坦福大学耐药数据库进行耐药分析。 结果:2022年宁波市新报告HIV-1感染者628例,成功获得426例序列,共检出15种基因亚型。CRF07_BC(42.0%,179/426)和CRF01_AE(30.5%,130/426)为两个优势基因亚型,随后依次为独特重组型(unique recombinant form,URF)(01_AE/07_BC) (7.0%,30/426)、CRF 08_BC(6.6%,28/426)、CRF 55_01B(4.9%,21/426)、CRF85_BC(2.3%,10/426)、B (2.1%,9/426)、C(1.9%,8/426)、URF(B/C) (0.7%,3/426)、URF (01_AE/C)(0.5%,2/426)、URF (01_AE/B)(0.5%,2/426)、CRF59_01B(0.2%,1/426)、CRF64_BC(0.2%,1/426)、CRF67_B(0.2%,1/426)和A1(0.2%,1/426)。治疗前耐药率为6.3%(27/426),其中非核苷类逆转录酶抑制剂、核苷类逆转录酶抑制剂和蛋白酶抑制剂耐药率分别为3.8%(16/426)、1.9%(8/426)和0.9%(4/426)。结论:2022年宁波市新报告HIV-1感染者毒株亚型复杂多样,有较高比例URF,治疗前处于中度耐药。
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abstractsObjective:To understand the characteristics of HIV-1 genotypes and primary drug resistance among newly reported HIV-1 infected people in Ningbo in 2022.Methods:Plasma samples were collected from newly reported HIV-1 infected patients before ART in Ningbo from January to December 2022. RNA was extracted, RT-PCR and nested PCR were used to amplify the pol gene sequences of HIV-1 strains. The genotypes were identified by phylogenetic tree construction. Drug resistance of these strains were analyzed by the online tool of the Stanford University HIV-1 Drug Resistance Database. Results:A total of 628 HIV-1 infected people were newly reported in Ningbo in 2022, of which 426 sequences were successfully obtained, revealing 15 different genotypes. The two predominant subtypes were CRF07_BC (42.0%, 179/426) and CRF01_AE (30.5%, 130/426), followed by unique recombinant form(URF)(01_AE/07_BC) (7.0%, 30/426), CRF08_BC (6.6%, 28/426), CRF55_01B (4.9%, 21/426), CRF85_BC (2.3%, 10/426), B (2.1%, 9/426), C (1.9%, 8/426), URF(B/C) (0.7%, 3/426), URF(01_AE/C) (0.5%, 2/426), URF(01_AE/B) (0.5%, 2/426), CRF59_01B (0.2%, 1/426), CRF64_BC (0.2%, 1/426), CRF67_B (0.2%, 1/426), and A1 (0.2%, 1/426). The overall primary drug resistance rate was 6.3% (27/426), with resistance rates to non-nucleoside reverse transcriptase inhibitors, nucleoside reverse transcriptase inhibitors, and protease inhibitors of 3.8% (16/426), 1.9% (8/426), and 0.9% (4/426), respectively.Conclusions:HIV-1 genotypes of newly reported HIV-1 infected people in Ningbo in 2022 are diverse, including a relatively high proportion of URFs. The overall drug resistance rate of patients before ART is intermediate.
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