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Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over Time

摘要Human pluripotent stem cell (hPSC)-derived progenies are immature versions of cells,presenting a potential limitation to the accurate modelling of diseases associated with maturity or age.Hence,it is important to characterise how closely cells used in culture resemble their native counterparts.In order to select appropriate time points of retinal pigment epithelium (RPE) cultures that reflect native counterparts,we characterised the transcriptomic profiles of the hPSC-derived RPE cells from 1-and 12-month cultures.We differentiated the human embryonic stem cell line H9 into RPE cells,performed single-cell RNA-sequencing of a total of 16,576 cells to assess themolecular changes of the RPE cells across these two culture time points.Our results indicate the stability of the RPE transcriptomic signature,with no evidence of an epithelial-mesenchymal tran-sition,and with the maturing populations of the RPE observed with time in culture.Assessment of Gene Ontology pathways revealed that as the cultures age,RPE cells upregulate expression of genes involved in metal binding and antioxidant functions.This might reflect an increased ability to han-dle oxidative stress as cells mature.Comparison with native human RPE data confirms a maturing transcriptional profile of RPE cells in culture.These results suggest that long-term in vitro culture of RPE cells allows the modelling of specific phenotypes observed in native mature tissues.Our work highlights the transcriptional landscape of hPSC-derived RPE cells as they age in culture,which provides a reference for native and patient samples to be benchmarked against.

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作者 Grace E.Lidgerwood [1] Anne Senabouth [2] Casey J.A.Smith-Anttila [3] Vikkitharan Gnanasambandapillai [2] Dominik C.Kaczorowski [2] Daniela Amann-Zalcenstein [3] Erica L.Fletcher [4] Shalin H.Naik [5] Alex W.Hewitt [6] Joseph E.Powell [7] Alice Pébay [1] 学术成果认领
作者单位 Department of Anatomy and Neuroscience,The University of Melbourne,Parkville,VIC 3010,Australia;Department of Surgery,The University of Melbourne,Parkville,VIC 3010,Australia;Centre for Eye Research Australia,Royal Victorian Eye and Ear Hospital,East Melbourne,VIC 3002,Australia [1] Garvan Weizmann Centre for Cellular Genomics,Garvan Institute of Medical Research,The Kinghorn Cancer Centre,Darlinghurst,NSW 2010,Australia [2] Single Cell Open Research Endeavour,The Walter and Eliza Hall Institute of Medical Research,Parkville,VIC 3052,Australia [3] Department of Anatomy and Neuroscience,The University of Melbourne,Parkville,VIC 3010,Australia [4] Single Cell Open Research Endeavour,The Walter and Eliza Hall Institute of Medical Research,Parkville,VIC 3052,Australia;Immunology Division,The Walter and Eliza Hall Institute of Medical Research,Parkville,VIC 3052,Australia;Department of Medical Biology,The University of Melbourne,Parkville,VIC 3010,Australia [5] Department of Surgery,The University of Melbourne,Parkville,VIC 3010,Australia;Centre for Eye Research Australia,Royal Victorian Eye and Ear Hospital,East Melbourne,VIC 3002,Australia;School of Medicine,Menzies Institute for Medical Research,University of Tasmania,Hobart,TAS 7005,Australia [6] Garvan Weizmann Centre for Cellular Genomics,Garvan Institute of Medical Research,The Kinghorn Cancer Centre,Darlinghurst,NSW 2010,Australia;UNSW Cellular Genomics Futures Institute,School of Medical Sciences,University of New South Wales,Sydney,NSW 2052,Australia [7]
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发布时间 2021-12-17(万方平台首次上网日期,不代表论文的发表时间)
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