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Bioinformatics analysis of two-component regulatory systems in Staphylococcus epidermidis

摘要Sixteen pairs of two-component regulatory systems are identified in the genome of Staphylococcus epidermidis ATCC12228 strain, which is newly sequenced by our laboratory for Medical Molecular Virology and Chinese National Human Genome Center at Shanghai, by using bioinformatics analysis. Comparative analysis of the twocomponent regulatory systems in S. epidermidis and that of S.aureus and Bacillus subtilis shows that these systems may regulate some important biological functions, e.g. growth,biofilm formation, and expression of virulence factors in S.epidermidis. Two conserved domains, i.e. HATPase_c and REC domains, are found in all 16 pairs of two-component proteins.Homologous modelling analysis indicates that there are 4similar HATPase_c domain structures of histidine kinases and 13 similar REC domain structures of response regulators,and there is one AMP-PNP binding pocket in the HATPase_c domain and three active aspartate residues in the REC domain. Preliminary experiment reveals that the bioinformatics analysis of the conserved domain structures in the two-component regulatory systems in S. epidermidis may provide useful information for discovery of potential drug target.

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作者单位 Ministry of Education and Health Key Laboratory for Medical Molecular Virology, Medical School of Fudan University, Shanghai 200032, China [1] Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University,Shanghai 200433, China; Shanghai Center for Bioinformation Technology, Shanghai 201203,China [2] Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China [3] Bioinformatics Center, Shanghai Institutes for Biological Studies,Chinese Academy of Sciences, Shanghai 200031, China [4]
分类号 R3
栏目名称
DOI 10.1360/03wc0384
发布时间 2004-09-16(万方平台首次上网日期,不代表论文的发表时间)
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