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Real-world performance analysis of a novel computational method in the precision oncology of pediatric tumors

摘要Background The utility of routine extensive molecular profiling of pediatric tumors is a matter of debate due to the high number of genetic alterations of unknown significance or low evidence and the lack of standardized and personalized deci-sion support methods.Digital drug assignment(DDA)is a novel computational method to prioritize treatment options by aggregating numerous evidence-based associations between multiple drivers,targets,and targeted agents.DDA has been validated to improve personalized treatment decisions based on the outcome data of adult patients treated in the SHIVA01 clinical trial.The aim of this study was to evaluate the utility of DDA in pediatric oncology.Methods Between 2017 and 2020,103 high-risk pediatric cancer patients(<21 years)were involved in our precision oncol-ogy program,and samples from 100 patients were eligible for further analysis.Tissue or blood samples were analyzed by whole-exome(WES)or targeted panel sequencing and other molecular diagnostic modalities and processed by a software system using the DDA algorithm for therapeutic decision support.Finally,a molecular tumor board(MTB)evaluated the results to provide therapy recommendations.Results Of the 100 cases with comprehensive molecular diagnostic data,88 yielded WES and 12 panel sequencing results.DDA identified matching off-label targeted treatment options(actionability)in 72/100 cases(72%),while 57/100(57%)showed potential drug resistance.Actionability reached 88%(29/33)by 2020 due to the continuous updates of the evidence database.MTB approved the clinical use of a DDA-top-listed treatment in 56 of 72 actionable cases(78%).The approved therapies had significantly higher aggregated evidence levels(AELs)than dismissed therapies.Filtering of WES results for targeted panels missed important mutations affecting therapy selection.Conclusions DDA is a promising approach to overcome challenges associated with the interpretation of extensive molecular profiling in the routine care of high-risk pediatric cancers.Knowledgebase updates enable automatic interpretation of a con-tinuously expanding gene set,a"virtual"panel,filtered out from genome-wide analysis to always maximize the performance of precision treatment planning.

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作者 Barbara Vodicska [1] Júlia Déri [1] Dóra Tihanyi [1] Edit Várkondi [1] Enik? Kispéter [1] Róbert Dóczi [1] Dóra Lakatos [1] Anna Dirner [1] Mátyás Vidermann [1] Péter Filotás [1] Réka Szalkai-Dénes [1] István Szegedi [2] Katalin Bartyik [3] Krisztina Míta Gábor [3] Réka Simon [4] Péter Hauser [5] Gy?rgy Péter [6] Csongor Kiss [2] Miklós Garami [5] István Peták [7] 学术成果认领
作者单位 Oncompass Medicine Hungary Kft,Retek Str.34.Budapest 1024,Hungary [1] Division of Pediatric Hematology-Oncology,Department of Pediatrics,Faculty of Medicine,University of Debrecen,Debrecen,Hungary [2] Department of Pediatrics,Albert Szent-Gy?rgyi Medical School,University of Szeged,Szeged,Hungary [3] Onco-Hematology Department,Velkey László Paediatric Health Centre,Miskolc,Hungary [4] Department of Paediatrics,Semmelweis University,Budapest,Hungary [5] Onco-Hematology Department,Heim Pál Children's Hospital,Budapest,Hungary [6] Oncompass Medicine Hungary Kft,Retek Str.34.Budapest 1024,Hungary;Department of Pharmacology and Pharmacotherapy,Semmelweis University,Budapest,Hungary;Department of Pharmaceutical Sciences,University of Illinois at Chicago,Chicago,USA;Genomate Health,Cambridge,MA,USA [7]
栏目名称 Original articles
DOI 10.1007/s12519-023-00700-2
发布时间 2023-11-14
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