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Precision organoid segmentation technique(POST):accurate organoid segmentation in challenging bright-field images

摘要Organoids possess immense potential for unraveling the intricate functions of human tissues and facilitating preclinical dis-ease treatment.Their applications span from high-throughput drug screening to the modeling of complex diseases,with some even achieving clinical translation.Changes in the overall size,shape,boundary,and other morphological features of organ-oids provide a noninvasive method for assessing organoid drug sensitivity.However,the precise segmentation of organoids in bright-field microscopy images is made difficult by the complexity of the organoid morphology and interference,including overlapping organoids,bubbles,dust particles,and cell fragments.This paper introduces the precision organoid segmentation technique(POST),which is a deep-learning algorithm for segmenting challenging organoids under simple bright-field imag-ing conditions.Unlike existing methods,POST accurately segments each organoid and eliminates various artifacts encoun-tered during organoid culturing and imaging.Furthermore,it is sensitive to and aligns with measurements of organoid activ-ity in drug sensitivity experiments.POST is expected to be a valuable tool for drug screening using organoids owing to its capability of automatically and rapidly eliminating interfering substances and thereby streamlining the organoid analysis and drug screening process.

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作者 Xuan Du [1] Yuchen Li [2] Jiaping Song [3] Zilin Zhang [4] Jing Zhang [2] Yanhui Li [5] Zaozao Chen [1] Zhongze Gu [4] 学术成果认领
作者单位 State Key Laboratory of Digital Medical Engineering,School of Biological Science and Medical Engineering,Southeast University,Nanjing 211189,China;Jiangsu Avatarget Biotechnology Co.,Ltd.,Nanjing 215163,China [1] Jiangsu Avatarget Biotechnology Co.,Ltd.,Nanjing 215163,China [2] Anhui Province Key Laboratory of Functional Agriculture and Functional Food,Anhui Science and Technology University,Chuzhou 239200,China [3] State Key Laboratory of Digital Medical Engineering,School of Biological Science and Medical Engineering,Southeast University,Nanjing 211189,China [4] State Key Laboratory for Novel Software Technology,Nanjing University,Nanjing 210008,China [5]
DOI 10.1631/bdm.2500119
发布时间 2026-02-06(万方平台首次上网日期,不代表论文的发表时间)
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生物设计与制造(英文版)

生物设计与制造(英文版)

2026年9卷1期

80-93页

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