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The chicken gut microbiome in conventional and alternative production systems

摘要The poultry gut microbiome plays a key role in nutrient digestion,immune function,and overall health.Differences among various farming systems,including conventional,antibiotic-free,free-range,and organic systems,influence microbial composition and function through variations in diet,genetic selection,environmental exposure,and anti-biotic use.Conventional systems typically rely on formulated diets and controlled housing conditions,often with rou-tine antimicrobial use.In contrast,organic systems emphasize natural feed ingredients,including roughage,outdoor access,and strict limitations on the use of antibiotics.These divergent practices shape the gut microbiota differently,with organic systems generally associated with greater exposure to environmental microbes and,consequently,greater microbial diversity.However,the implications of this increased diversity for poultry health and performance are complex,as organic systems may also carry a higher risk of pathogen exposure.This review summarizes current findings on the chicken gut microbiome across conventional and alternative production systems(antibiotic-free,free-range,and organic),focusing on microbial diversity,functional potential,and disease resilience.The need for standard-ized methodologies and consistent nomenclature in microbiome research is also discussed to improve comparability across studies.Understanding how production systems influence the gut microbiota is essential for improving poultry health and productivity while addressing challenges related to antimicrobial resistance and sustainable farming practices.

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作者 Yu-Chieh Cheng [1] Margret Krieger [2] Anna-Maria Korves [3] Amélia Camarinha-Silva [1] 学术成果认领
作者单位 University of Hohenheim,Institute of Animal Science,Stuttgart,Germany;HoLMiR-Hohenheim Center for Livestock Microbiome Research,Stuttgart,Germany [1] Department of Animal Nutrition and Animal Health,University of Kassel,Witzenhausen,Germany [2] Department Biological Safety,German Federal Institute for Risk Assessment,Berlin,Germany [3]
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DOI 10.1186/s40104-025-01293-8
发布时间 2026-05-09(万方平台首次上网日期,不代表论文的发表时间)
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