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Identification, bioinformatic analysis and expression profiling of candidate mRNA-like non-coding RNAs in Sus scrofa

摘要Messenger RNA-like non-coding RNAs (mlncRNAs) are a newly identified group of non-coding RNAs (ncRNAs) that may be involved in a number of critical cellular events. In this study, 93 candidate porcine mlncRNAs were obtained by computational prediction and screening, among which 72 were mapped to the porcine genome. Further analysis of 8 representative candidates revealed that these mlncRNA candidates are not highly conserved among species. Remarkably, one of the candidates, sTF35495, was found to be precursor ora putative porcine microRNA. By RACE PCR, we determined that the full length ofsTF35495 was 3 kb. The protein-coding potential of this RNA was tested in silico with no significant finding. Semi-quantitative RT-PCR analysis of the subgroup of 8 candidates revealed two distinct expression profiles and two molecules were further validated by reai-time PCR. The predicted pre-microRNA sequence in this study provides a potentially interesting insight into the in vivo function of porcine mlncRNAs and our findings suggest that they play key biological roles in Sus scrofa.

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分类号 Q3(遗传学)
栏目名称
DOI 10.1016/S1673-8527(08)60162-9
发布时间 2010-07-12(万方平台首次上网日期,不代表论文的发表时间)
基金项目
国家自然科学基金((30830080;30800779)) the Natural Science Foundation of Beijing((5072035)) the Ministry of Science and Technology of China((2006AA10Z135;2008AA10Z143;2006CB102105;2009CB941604))
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遗传学报

遗传学报

2009年36卷12期

695-702页

SCIMEDLINEISTICCSCDCABP

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