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Decoding transcriptional regulation via a human gene expression predictor

摘要Transcription factors(TFs)regulate cellular activities by controlling gene expression,but a predictive model describing how TFs quantitatively modulate human transcriptomes is lacking.We construct a universal human gene expression predictor named EXPLICIT-Human and utilize it to decode transcriptional regu-lation.Using the expression of 1613 TFs,the predictor reconstitutes highly accurate transcriptomes for samples derived from a wide range of tissues and conditions.The broad applicability of the predictor in-dicates that it recapitulates the quantitative relationships between TFs and target genes ubiquitous across tissues.Significant interacting TF-target gene pairs are extracted from the predictor and enable down-stream inference of TF regulators for diverse pathways involved in development,immunity,metabolism,and stress response.A detailed analysis of the hematopoiesis process reveals an atlas of key TFs regulating the development of different hematopoietic cell lineages,and a portion of these TFs are conserved between humans and mice.The results demonstrate that our method is capable of delineating the TFs responsible for fate determination.Compared to other existing tools,EXPLICIT-Human shows a better performance in recovering the correct TF regulators.

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作者 Yuzhou Wang [1] Yu Zhang [2] Ning Yu [3] Bingyan Li [3] Jiazhen Gong [2] Yide Mei [3] Jianqiang Bao [3] Shisong Ma [4] 学术成果认领
作者单位 The First Affiliated Hospital of USTC,Division of Life Sciences and Medicine,University of Science and Technology of China,Hefei,Anhui 230027, China;MOE Key Laboratory for Cellular Dynamics,School of Life Sciences,Division of Life Sciences and Medicine,University of Science and Technology of China,Innovation Academy for Seed Design,Chinese Academy of Sciences,Hefei,Anhui 230027,China [1] MOE Key Laboratory for Cellular Dynamics,School of Life Sciences,Division of Life Sciences and Medicine,University of Science and Technology of China,Innovation Academy for Seed Design,Chinese Academy of Sciences,Hefei,Anhui 230027,China [2] The First Affiliated Hospital of USTC,Division of Life Sciences and Medicine,University of Science and Technology of China,Hefei,Anhui 230027, China [3] MOE Key Laboratory for Cellular Dynamics,School of Life Sciences,Division of Life Sciences and Medicine,University of Science and Technology of China,Innovation Academy for Seed Design,Chinese Academy of Sciences,Hefei,Anhui 230027,China;School of Data Science,University of Science and Technology of China,Hefei,Anhui 230027,China [4]
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发布时间 2023-07-03(万方平台首次上网日期,不代表论文的发表时间)
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2023年50卷5期

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