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The genome-wide meiotic recombination landscape in ciliates and its implications for crossover regulation and genome evolution

摘要Meiotic recombination is essential for sexual reproduction and its regulation has been extensively studied in many taxa.However,genome-wide recombination landscape has not been reported in ciliates and it re-mains unknown how it is affected by the unique features of ciliates:the synaptonemal complex(SC)-in-dependent meiosis and the nuclear dimorphism.Here,we show the recombination landscape in the model ciliate Tetrahymena thermophila by analyzing single-nucleotide polymorphism datasets from 38 hybrid progeny.We detect 1021 crossover(CO)events(35.8 per meiosis),corresponding to an overall CO rate of 9.9 cM/Mb.However,gene conversion by non-crossover is rare(1.03 per meiosis)and not biased towards G or C alleles.Consistent with the reported roles of SC in CO interference,we find no obvious sign of CO interference.CO tends to occur within germ-soma common genomic regions and many of the 44 identified CO hotspots localize at the centromeric or subtelomeric regions.Gene ontology analyses show that CO hotspots are strongly associated with genes responding to environmental changes.We discuss these re-sults with respect to how nuclear dimorphism has potentially driven the formation of the observed recombination landscape to facilitate environmental adaptation and the sharing of machinery among meiotic and somatic recombination.

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作者 Lu Fu [1] Chen Gu [1] Kazufumi Mochizuki [2] Jie Xiong [3] Wei Miao [4] Guangying Wang [5] 学术成果认领
作者单位 Key Laboratory of Aquatic Biodiversity and Conservation,Institute of Hydrobiology,Chinese Academy of Sciences,Wuhan,Hubei 430072,China;University of Chinese Academy of Sciences,Beijing 100049,China [1] Institute of Human Genetics(IGH),CNRS,University of Montpellier,34396 Montpellier,France [2] Key Laboratory of Aquatic Biodiversity and Conservation,Institute of Hydrobiology,Chinese Academy of Sciences,Wuhan,Hubei 430072,China;Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture,Chinese Academy of Sciences,Wuhan,Hubei 430072,China [3] Key Laboratory of Aquatic Biodiversity and Conservation,Institute of Hydrobiology,Chinese Academy of Sciences,Wuhan,Hubei 430072,China;University of Chinese Academy of Sciences,Beijing 100049,China;Key Laboratory of Lake and Watershed Science for Water Security,Chinese Academy of Sciences,Nanjing,Jiangsu 210008,China [4] Key Laboratory of Aquatic Biodiversity and Conservation,Institute of Hydrobiology,Chinese Academy of Sciences,Wuhan,Hubei 430072,China [5]
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DOI 10.1016/j.jgg.2023.09.013
发布时间 2024-04-10(万方平台首次上网日期,不代表论文的发表时间)
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