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Prevalence,variation,and transmission patterns of human respiratory syncytial virus from pediatric patients in Hubei,China during 2020-2021

摘要Human respiratory syncytial virus(RSV)is a severe threat to children and a main cause of acute lower respiratory tract infections.Nevertheless,the intra-host evolution and inter-regional diffusion of RSV are little known.In this study,we performed a systematic surveillance in hospitalized children in Hubei during 2020-2021,in which 106 RSV-positive samples were detected both clinically and by metagenomic next generation sequencing(mNGS).RSV-A and RSV-B groups co-circulated during surveillance with RSV-B being predominant.About 46 high-quality genomes were used for further analyses.A total of 163 intra-host nucleotide variation(iSNV)sites distributed in 34 samples were detected,and glycoprotein(G)gene was the most enriched gene for iSNVs,with non-synonymous substitutions more than synonymous substitutions.Evolutionary dynamic analysis showed that the evolutionary rates of G and NS2 genes were higher,and the population size of RSV groups changed over time.We also found evidences of inter-regional diffusion from Europe and Oceania to Hubei for RSV-A and RSV-B,respectively.This study highlighted the intra-host and inter-host evolution of RSV,and provided some evi-dences for understanding the evolution of RSV.

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作者单位 CAS Key Laboratory of Special Pathogens and Biosafety,Wuhan Institute of Virology,Center for Biosafety Mega-Science,Chinese Academy of Sciences,Wuhan,430071,China;National Virus Resource Center,Chinese Academy of Sciences,Wuhan Institute of Virology,Center for Biosafety Mega-Science,Wuhan,430071,China;Computational Virology Group,Center for Bacteria and Viruses Resources and Bioinformation,Wuhan Institute of Virology,Chinese Academy of Sciences,Wuhan,430071,China [1] CAS Key Laboratory of Special Pathogens and Biosafety,Wuhan Institute of Virology,Center for Biosafety Mega-Science,Chinese Academy of Sciences,Wuhan,430071,China;National Virus Resource Center,Chinese Academy of Sciences,Wuhan Institute of Virology,Center for Biosafety Mega-Science,Wuhan,430071,China;Computational Virology Group,Center for Bacteria and Viruses Resources and Bioinformation,Wuhan Institute of Virology,Chinese Academy of Sciences,Wuhan,430071,China;University of Chinese Academy of Sciences,Beijing,101408,China;Department of Respiratory Medicine,Wuhan Children' Hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan,430014,China;Pediatric Respiratory Disease Laboratory,Institute of Maternal and Child Health,Wuhan Children's Hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan,430014,China [2] CAS Key Laboratory of Special Pathogens and Biosafety,Wuhan Institute of Virology,Center for Biosafety Mega-Science,Chinese Academy of Sciences,Wuhan,430071,China;National Virus Resource Center,Chinese Academy of Sciences,Wuhan Institute of Virology,Center for Biosafety Mega-Science,Wuhan,430071,China;Computational Virology Group,Center for Bacteria and Viruses Resources and Bioinformation,Wuhan Institute of Virology,Chinese Academy of Sciences,Wuhan,430071,China;University of Chinese Academy of Sciences,Beijing,101408,China [3] Department of Respiratory Medicine,Wuhan Children' Hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan,430014,China;Pediatric Respiratory Disease Laboratory,Institute of Maternal and Child Health,Wuhan Children's Hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan,430014,China [4]
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DOI 10.1016/j.virs.2023.05.001
发布时间 2024-03-27(万方平台首次上网日期,不代表论文的发表时间)
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中国病毒学

中国病毒学

2023年38卷3期

363-372页

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