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Random forest algorithm reveals novel sites in HA protein that shift receptor binding preference of the H9N2 avian influenza virus

摘要A switch from avian-type α-2,3 to human-type α-2,6 receptors is an essential element for the initiation of a pandemic from an avian influenza virus.Some H9N2 viruses exhibit a preference for binding to human-type α-2,6 receptors.This identifies their potential threat to public health.However,our un-derstanding of the molecular basis for the switch of receptor preference is still limited.In this study,we employed the random forest algorithm to identify the potentially key amino acid sites within hem-agglutinin(HA),which are associated with the receptor binding ability of H9N2 avian influenza virus(AIV).Subsequently,these sites were further verified by receptor binding assays.A total of 12 sub-stitutions in the HA protein(N158D,N158S,A160 N,A160D,A160T,T163I,T163V,V190T,V190A,D193 N,D193G,and N231D)were predicted to prefer binding to α-2,6 receptors.Except for the V190T substitution,the other substitutions were demonstrated to display an affinity for preferential binding toα-2,6 receptors by receptor binding assays.Especially,the A160T substitution caused a significant upregulation of immune-response genes and an increased mortality rate in mice.Our findings provide novel insights into understanding the genetic basis of receptor preference of the H9N2 AIV.

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作者 Yuncong Yin [1] Wen Li [2] Rujian Chen [2] Xiao Wang [2] Yiting Chen [2] Xinyuan Cui [2] Xingbang Lu [2] David M.Irwin [3] Xuejuan Shen [2] Yongyi Shen [4] 学术成果认领
作者单位 College of Veterinary Medicine,Yangzhou University,Yangzhou 225009,China;Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses,Yangzhou University,Yangzhou 225009,China;International Joint Laboratory for Cooperation in Agriculture and Agricultural Product Safety,Ministry of Education,Yangzhou University,Yangzhou 225009,China [1] Guangdong Laboratory for Lingnan Modern Agriculture,State Key Laboratory for Animal Disease Control and Prevention,Center for Emerging and Zoonotic Diseases,College of Veterinary Medicine,South China Agricultural University,Guangzhou 510642,China [2] Department of Laboratory Medicine and Pathobiology,University of Toronto,Toronto M5S1A8,Canada;Banting and Best Diabetes Centre,University of Toronto,Toronto M5S1A8,Canada [3] Guangdong Laboratory for Lingnan Modern Agriculture,State Key Laboratory for Animal Disease Control and Prevention,Center for Emerging and Zoonotic Diseases,College of Veterinary Medicine,South China Agricultural University,Guangzhou 510642,China;School of Agriculture and Biology,Shanghai Jiao Tong University,Shanghai 200240,China;Guangdong Provincial Key Laboratory of Zoonosis Prevention and Control,Guangzhou 510642,China [4]
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DOI 10.1016/j.virs.2024.12.010
发布时间 2025-05-06(万方平台首次上网日期,不代表论文的发表时间)
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中国病毒学

中国病毒学

2025年40卷1期

109-117页

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