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Distinguishing between wild-caught and captive-bred Common Pheasant using methylation rate of skeletal muscle DNA

摘要Illegal hunting and trafficking of wildlife and their derivatives extort unprecedented population decline of relatively many species pushing them towards extinction.Notwithstanding contemporary counteracting in-terventions at international,regional,national and local levels,wildlife farming is advocated as an alternative approach to minimize pressure on wild populations.For wildlife farming to be an effective conservation tool,the integration of wildlife forensics is inevitable to allow distinction between captive-bred and wild-caught species.To this end,we analyzed methylation rates of skeletal muscle samples(pectoralis major,triceps brachii,gastrocnemius,biceps femoris,and neck muscles)from 60 captive-bred and 30 wild-caught Common Pheasant.A total of 13,507 differentially methylated regions were identified between five wild-caught and five captive-bred individuals through whole-genome methylation sequencing(WGBS).Based on the selected five methylation sites,LOC116231076,LOC116242223,ATAD2B,EGFL6,and HS2ST,quantitative detection technique was developed using methylation-sensitive high-resolution melting curve(MS-HRM)to measure methylation rates.The results showed significant differences in methylation rates at all differential sites between wild-caught and captive-bred individuals(|t|=0.67-33.10,P=0.000-0.042).The discrimination accuracy rate of each locus was highest in the gastrocnemius muscle and lowest in the neck muscle.The discrimination accuracy rate on LOC116231076,LOC116242223,ATAD2B,EGFL6,and HS2ST methylation sites for gastrocnemius muscle was 64.98%,100.00%,68.54%,63.79%,and 63.70%,respectively;and for neck muscle it was 67.42%,68.06%,83.61%,65.04%,and 68.85%,respectively.The united discrimination accuracy rate of the five loci were 100.00%for gastrocnemius muscle,99.78%for biceps femoris muscle,97.52%for pectoralis major muscle,93.96%for triceps brachii muscle,and 91.63%for neck muscle,respectively.The panel also revealed excellent repeatability,reproduc-ibility,sensitivity and universality to mammals and avian species.This study establishes an effective,accurate and low-cost identification technology for the identification of wild and farmed Common Pheasant,and also provides a reference for the development of identification methods for other species.

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作者 Wenhui Wang [1] Lijun Lin [1] Yue Ma [1] Yan Cui [2] Qi Zhang [1] Jincheng Yang [1] Yongheng Zhou [1] Liangyu Cui [1] Boyang Liu [1] Chang Su [1] Mengjia Yu [1] Yuwei Gao [1] Peng Gao [1] Yujia Du [3] Yu Zhou [3] Elizabeth Kamili [1] Shuhui Yang [1] Yanchun Xu [1] 学术成果认领
作者单位 College of Wildlife and Protected Area,Northeast Forestry University,Harbin,150040,China [1] Lesser Xing'an Mountains Wildlife Rescue and Breeding Center of Heilongjiang Province,Yichun,153000,China [2] College of Life Sciences,Northeast Forestry University,Harbin,150040,China [3]
DOI 10.1016/j.avrs.2025.100234
发布时间 2025-07-07(万方平台首次上网日期,不代表论文的发表时间)
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