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DrugRep:an automatic virtual screening server for drug repurposing

摘要Computationally identifying new targets for existing drugs has drawn much attention in drug repurposing due to its advantages over de novo drugs,including low risk,low costs,and rapid pace.To facilitate the drug repurposing computation,we constructed an automated and parameter-free virtual screening server,namely DrugRep,which performed molecular 3D structure construction,binding pocket prediction,docking,similarity comparison and binding affinity screening in a fully automatic manner.DrugRep repurposed drugs not only by receptor-based screening but also by ligand-based screening.The former automatically detected possible binding pockets of the receptor with our cavity detection approach,and then performed batch docking over drugs with a widespread docking program,AutoDock Vina.The latter explored drugs using seven well-established similarity measuring tools,including our recently developed ligand-similarity-based methods LigMate and FitDock.DrugRep utilized easy-to-use graphic interfaces for the user operation,and offered interactive predictions with state-of-the-art accuracy.We expect that this freely available online drug repurposing tool could be beneficial to the drug discovery community.The web site is http://cao.labshare.cn/drugrep/.

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发布时间 2023-05-04(万方平台首次上网日期,不代表论文的发表时间)
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中国药理学报(英文版)

中国药理学报(英文版)

2023年44卷4期

888-896页

SCIMEDLINEISTICCSCDCABP

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