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Mapping of quantitative trait loci using the skew-normal distribution

摘要In standard interval mapping (IM) of quantitative trait loci (QTL), the QTL effect is described by a normal mixture model. When this assumption of normality is violated, the most commonly adopted strategy is to use the previous model after data transformation. However, an appropriate transformation may not exist or may be difficult to find. Also this approach can raise interpretation issues. An interesting alternative is to consider a skew-normal mixture model in standard IM, and the resulting method is here denoted as skew-normal IM. This flexible model that includes the usual symmetric normal distribution as a special case is important, allowing continuous variation from normality to non-normality. In this paper we briefly introduce the main peculiarities of the skew-normal distribution. The maximum likelihood estimates of parameters of the skew-normal distribution are obtained by the expectation-maximization (EM) algorithm. The proposed model is illustrated with real data from an intercross experiment that shows a significant departure from the normality assumption. The performance of the skew-normal IM is assessed via stochastic simulation. The results indicate that the skew-normal IM has higher power for QTL detection and better precision of QTL location as compared to standard IM and nonparametric IM.

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作者单位 Centre for Mathematics and Its Applications, IST-Technical University of Lisbon, 1049-001 Lisboa, Portugal;Department of Statistics and Operational Research, Faculty of Sciences, University of Lisbon, 1749-016 Lisboa, Portugal;Gulbenkian Institute of Science, P-2781-901 Oeiras, Portugal [1] Department of Mathematics and Centre for Mathematics and Its Applications, IST-Technical University of Lisbon, 1049-001 Lisboa, Portugal [2] Gulbenkian Institute of Science, P-2781-901 Oeiras, Portugal [3]
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发布时间 2007-12-17(万方平台首次上网日期,不代表论文的发表时间)
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浙江大学学报B(英文版)

浙江大学学报B(英文版)

2007年8卷11期

792-801页

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